View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12999_low_4 (Length: 459)

Name: NF12999_low_4
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12999_low_4
NF12999_low_4
[»] chr7 (6 HSPs)
chr7 (5-388)||(46538335-46538708)
chr7 (5-213)||(46537659-46537866)
chr7 (5-210)||(46537875-46538092)
chr7 (5-213)||(46538104-46538326)
chr7 (415-456)||(46538722-46538763)
chr7 (279-323)||(37447670-37447714)
[»] chr8 (4 HSPs)
chr8 (5-248)||(18432581-18432836)
chr8 (89-213)||(18432845-18432969)
chr8 (5-86)||(18437673-18437754)
chr8 (279-323)||(8812140-8812184)
[»] chr4 (3 HSPs)
chr4 (5-199)||(50940783-50940989)
chr4 (5-69)||(50940696-50940760)
chr4 (415-456)||(50938978-50939019)
[»] chr5 (1 HSPs)
chr5 (279-323)||(14988163-14988207)
[»] chr6 (3 HSPs)
chr6 (278-321)||(8499856-8499899)
chr6 (415-456)||(8498383-8498424)
chr6 (199-248)||(8499970-8500019)
[»] chr3 (1 HSPs)
chr3 (279-323)||(33813792-33813836)
[»] chr1 (1 HSPs)
chr1 (279-323)||(39333666-39333710)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 388
Target Start/End: Original strand, 46538335 - 46538708
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaacttttaagttgcatattttcgta--ggaattgtttttaatc 102  Q
    |||||||||||||||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||| |    
T  46538335 ttaatggcaattgagaacgtagataatagcttaaaaaggtcgttaatggcaattcaaaacttttaagttgcatattttcgtataggaattgcttttaacc 46538434  T
Q  103 attatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggttaagtcgattttgaa 202  Q
    || |||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46538435 at-atgcactaattattctatcaattattacctgttaaaaagcaattatgacgtacttatttcaaaaattaacatgtatcaaggttaagtcgattttgaa 46538533  T
Q  203 tagtaattatgcattacgggtcaaagggcattagcaagcatcatgcaagcattctgctaatcaattactattgctctaattgcttttatggctgcaatga 302  Q
    ||||||||||||||||||||||| |||||||||            |||||||| ||||||| ||||| |||||||||||||||||||||| |||||||||    
T  46538534 tagtaattatgcattacgggtcatagggcatta-----------ccaagcattatgctaataaattattattgctctaattgcttttatgactgcaatga 46538622  T
Q  303 atagtaattattacaaatagacagagaatggaaattgtgccaaactctagaatttctctaattgctttgtcgggaaacatatttga 388  Q
    |||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  46538623 atagtaattattaccaatagacacataatggaaattgtgccaaactccagaatttctctaattgctttgtctgaaaacatatttga 46538708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 46537659 - 46537866
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaacttttaagttgcatattttcg--taggaattgtttttaatc 102  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||  |    
T  46537659 ttaatggcaattgagaacgtagttaatggcttgaaaacgttgttaatgacaattgaaaacttttaagttgcatattttcgtataggaattgcttttatgc 46537758  T
Q  103 attatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggttaagtcgattttgaa 202  Q
    |||||||||||||  || || |||||||||||| || ||||||||||||||||||||||||||||||||  | ||||||||||||| | |||||||| ||    
T  46537759 attatgcactaatcactctaccaattattatctatt-aaaagcaattatgacgtacttatttcaaaaat--aaacgtatcaaggttgattcgatttttaa 46537855  T
Q  203 tagtaattatg 213  Q
    | |||||||||    
T  46537856 tggtaattatg 46537866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 46537875 - 46538092
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaacttttaagttgcatattttcg--taggaattgtttttaat- 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||  ||||||||| ||| |||     
T  46537875 ttaatggcaattgagaacgtagttaatggcttgaaaacgtcgttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgatttaaatt 46537974  T
Q  102 ---------cattatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggttaagt 192  Q
             ||||||||||||||| || || |||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | |    
T  46537975 gcttttatgcattatgcactaattactctaccaatcattacctgttaaagagcaattatgacgtacttatttcaaaaataaacacgtatcaaggttgatt 46538074  T
Q  193 cgattttgaatagtaatt 210  Q
    ||||||| ||||||||||    
T  46538075 cgatttttaatagtaatt 46538092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 46538104 - 46538326
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaactttta--agttgcatattttcgta--ggaa---------- 90  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||  ||||| ||||||||||  |   |||||||||||||  ||||              
T  46538104 ttaatggcaattgagaacgtagttaatggcttgaaaatgtcgttaattgcaattgaaaacttttataaaaggcatattttcgtataggaaatgctttaaa 46538203  T
Q  91 ttgtttttaatcattatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggttaa 190  Q
    |||||||||  ||||||||||||||| || || ||||||||| || |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |    
T  46538204 ttgtttttatgcattatgcactaattactctaccaattattacctcttaaaaagtaattatgacgtacttatttaaaaaataaacacgtatcaaggttga 46538303  T
Q  191 gtcgattttgaatagtaattatg 213  Q
     | |||||| |||||||||||||    
T  46538304 tttgatttttaatagtaattatg 46538326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 46538722 - 46538763
Alignment:
Q  415 attgacacataatggaaattgtgatgctgttgatgatgtcca 456  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  46538722 attgacacataatggaaattgtgatgttgttgatgatgtcca 46538763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 37447714 - 37447670
Alignment:
Q  279 taattgcttttatggctgcaatgaatagtaattattacaaataga 323  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||    
T  37447714 taattgcttttatggttgcaatgaatagaaattattaccaataga 37447670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 18432836 - 18432581
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaacttttaagttgcatattttcgt--aggaattgtttttaat- 101  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||  |||| | ||||||||||  ||||||||||||  |||||||| ||| |||     
T  18432836 ttaatggcaattgagaacgtagttaatagcttgaaaacatcgttaatggaaattgagaacttttaaggagcatattttcgtttaggaattgctttaaatt 18432737  T
Q  102 ---------cattatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggttaagt 192  Q
             ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18432736 gcttttaaccattatgcactaattactctaccaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacatgtatcaaggttaagt 18432637  T
Q  193 cgattttgaatagtaattatgcattacgggtcaaagggcattagcaagcatcatgc 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  18432636 cgattttaaatagtaattatgcattacgggtcaaagggcattaccaagcattatgc 18432581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 18432969 - 18432845
Alignment:
Q  89 aattgtttttaatcattatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggtt 188  Q
    ||||| |||||  ||||||||||||||| || || ||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  18432969 aattgcttttatgcattatgcactaattactctaccaattattacctgttaaaaagaaattatgacgtacttatttcaaaaataaacatgtatcaaggtt 18432870  T
Q  189 aagtcgattttgaatagtaattatg 213  Q
     | |||||||| |||||||||||||    
T  18432869 gattcgatttttaatagtaattatg 18432845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 18437754 - 18437673
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaacttttaagttgcatattttcgta 86  Q
    |||||||||||||||||| || |||| ||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  18437754 ttaatggcaattgagaacatatttaagggcttgaaaacgtagttaatggcaattgaaaacttttaagttgcatattttcgta 18437673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 8812140 - 8812184
Alignment:
Q  279 taattgcttttatggctgcaatgaatagtaattattacaaataga 323  Q
    ||||| |||||||||||||||||||||  ||||||||| ||||||    
T  8812140 taattacttttatggctgcaatgaatatgaattattaccaataga 8812184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 50940989 - 50940783
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaacttttaagttgcatattttcg--taggaattgtttttaat- 101  Q
    ||||||||||||||||| |||||||  ||||| |||||||| |||||| ||||| |||||||||||||||||||||||||  ||||||||||||| |||     
T  50940989 ttaatggcaattgagaatgtagttataggcttgaaaacgtctttaatggcaattgaaaacttttaagttgcatattttcgtataggaattgttttaaatt 50940890  T
Q  102 ---------cattatgcactaatttctttatcaattattatctgttaaaaagcaattatgacgtacttatttcaaaaattaacacgtatcaaggttaagt 192  Q
             ||||||||||||||| || || || | |||| | |||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| | |    
T  50940889 gcttttatgcattatgcactaattactctaacagtcattaccggttaaagagcaattatgacgtacttatttcaaaaataaacatgtatcaaagttgatt 50940790  T
Q  193 cgatttt 199  Q
    |||||||    
T  50940789 cgatttt 50940783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 50940760 - 50940696
Alignment:
Q  5 ttaatggcaattgagaacgtagttaatggcttaaaaacgtcgttaatgacaattcaaaactttta 69  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  50940760 ttaatggcaattgtgaacgtagttaatggcttgaaaacgtcgttaatggcaattgaaaactttta 50940696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 50939019 - 50938978
Alignment:
Q  415 attgacacataatggaaattgtgatgctgttgatgatgtcca 456  Q
    ||||||||| ||||| |||||||||| |||||||||||||||    
T  50939019 attgacacagaatggtaattgtgatgttgttgatgatgtcca 50938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 14988163 - 14988207
Alignment:
Q  279 taattgcttttatggctgcaatgaatagtaattattacaaataga 323  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  14988163 taattgcttttatggctgcaatgaatagtaattattaccaataga 14988207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 8499899 - 8499856
Alignment:
Q  278 ctaattgcttttatggctgcaatgaatagtaattattacaaata 321  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  8499899 ctaattgcttttatggctgcaatgaatagtaattattaccaata 8499856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 8498424 - 8498383
Alignment:
Q  415 attgacacataatggaaattgtgatgctgttgatgatgtcca 456  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  8498424 attgatacataatggaaattgtgatgctgttgatgatgtcca 8498383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 8500019 - 8499970
Alignment:
Q  199 tgaatagtaattatgcattacgggtcaaagggcattagcaagcatcatgc 248  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  8500019 tgaatagtaattatgcattatgggtcaaaaggcattaccaagcattatgc 8499970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 33813836 - 33813792
Alignment:
Q  279 taattgcttttatggctgcaatgaatagtaattattacaaataga 323  Q
    ||||| ||||||||| || ||||||||||||||||||| ||||||    
T  33813836 taattacttttatggttgtaatgaatagtaattattaccaataga 33813792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 39333710 - 39333666
Alignment:
Q  279 taattgcttttatggctgcaatgaatagtaattattacaaataga 323  Q
    |||||| |||||||||||||||||||| |||||| ||| ||||||    
T  39333710 taattgattttatggctgcaatgaataataattagtaccaataga 39333666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University