View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12999_low_8 (Length: 401)
Name: NF12999_low_8
Description: NF12999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12999_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 46938369 - 46937982
Alignment:
| Q |
1 |
tttcaactttggtgattcaaattctgataccggcacccttgttaccgctggttttgaaagcctttacccaccaaatggacacacttactttcatctacca |
100 |
Q |
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| T |
46938369 |
tttcaactttggtgattcaaattctgataccggcacccttgttaccgctggttttgaaagcctttacccaccaaatggacacacttactttcatctacca |
46938270 |
T |
|
| Q |
101 |
tcaggaagatactctgatggccggctcatcattgattttcttagtaacaactaaatctccataaattaaaaagtgtggannnnnnnnctttctttcgtct |
200 |
Q |
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| T |
46938269 |
tcagggagatactctgatggccggctcatcattgattttcttagtaacaactaaatctccataaattaaaaagtgtggattttttttctttctttcgtct |
46938170 |
T |
|
| Q |
201 |
tcctaatgatgttgtcttggatgttgttttcagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaa |
300 |
Q |
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| T |
46938169 |
tcctaatgatattgtcttggatgttgttttcagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaa |
46938070 |
T |
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| Q |
301 |
aggttgtaacttcgcagcagctggttcaactatccttccagccactgcatcatccatctgccctttctcctttgggattcaggtgtct |
388 |
Q |
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| T |
46938069 |
aggttgtaacttcgcagcagctggttcaactatccttccagccactgcatcatccatctgccctttctcctttgggattcaggtgtct |
46937982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 36633973 - 36634084
Alignment:
| Q |
231 |
cagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttgtaacttcgcagcagctggttcaac |
330 |
Q |
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||||||||||| |||| || |||||||||||||| ||| |||||||| |||| | ||||||||| | || || ||||| |||||||| |||||||| |
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| T |
36633973 |
cagtggatgcaatggacttgccattcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttcaac |
36634072 |
T |
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| Q |
331 |
tatccttccagc |
342 |
Q |
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|||||||||||| |
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| T |
36634073 |
tatccttccagc |
36634084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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