View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299R-Insertion-2 (Length: 700)

Name: NF1299R-Insertion-2
Description: NF1299R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299R-Insertion-2
NF1299R-Insertion-2
[»] chr8 (12 HSPs)
chr8 (181-700)||(8738483-8739000)
chr8 (9-157)||(8738305-8738453)
chr8 (199-341)||(8690720-8690862)
chr8 (199-341)||(8704992-8705134)
chr8 (451-523)||(14372433-14372505)
chr8 (451-523)||(8705222-8705294)
chr8 (181-341)||(8722051-8722211)
chr8 (429-523)||(8740276-8740370)
chr8 (435-523)||(8723641-8723729)
chr8 (414-561)||(8722262-8722409)
chr8 (207-341)||(8723422-8723556)
chr8 (429-524)||(8690920-8691015)


Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 181 - 700
Target Start/End: Original strand, 8738483 - 8739000
Alignment:
Q  181 ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8738483 ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttc 8738582  T
Q  281 cgatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattaccatgtatgtnnnnnnnnncaaacctcgtctttattttcttt 380  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||    
T  8738583 ccatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattaccatgtatgtaaaaaaa--caaacctcgtctttattttcttt 8738680  T
Q  381 gcaaacctagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttct 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8738681 gcaaacctagtaattattttcttataattttctttttgatataatccttctttgtcagctcgttcgataataaaatcacatgacccggaatggtttttct 8738780  T
Q  481 tgtgtccttgtgattataagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaattgaacatgatattaaaat 580  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8738781 tgtgtccttgtgattacaagtacgcaaagagtaaaaagtttaaccgagcaacggagttagggttttggaaagctactggaattgaacatgatattaaaat 8738880  T
Q  581 tcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccctgttaggaccaattgggttatacat 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  8738881 tcatggtaccgacaaagttatagcaactaagaagattcttgttttctatttgaaagctaccggaaataaatgccatgttaggaccaactgggttatacat 8738980  T
Q  681 gagtatcatgatgctgtcac 700  Q
    ||||||||||||||||||||    
T  8738981 gagtatcatgatgctgtcac 8739000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 8738305 - 8738453
Alignment:
Q  9 gcaacacatatatagtaagagacagttccccatgctttgtttttgttcaactttgggctccaaaagtaaattatgacgtaccaacatcaaagctctctca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8738305 gcaacacatatatagtaagagacagttccccatgctttgtttttgttcaactttgggctccaaaagtaaattatgacgtaccaacatcaaagctctctca 8738404  T
Q  109 cttccttcttgtagcattataaattgatgcaaacctaccaacatattca 157  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||    
T  8738405 ctaccttcttgtagcattataaattgatgcaaacctaccaacatattca 8738453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 8690720 - 8690862
Alignment:
Q  199 ttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttccgatgttaacaatgtcat 298  Q
    ||||||| ||||||||||||||||||||| ||||||| || || || ||||| ||||| || |||||||||||||||| ||||  ||| |||||||| ||    
T  8690720 ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtcaacaatgttat 8690819  T
Q  299 agcagaagttgatgtttgcaggtttgagccttgggaattacca 341  Q
    ||| ||||||||||| |||| ||| || |||||||| ||||||    
T  8690820 agctgaagttgatgtatgcaagttcgaaccttgggatttacca 8690862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 8704992 - 8705134
Alignment:
Q  199 ttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttccgatgttaacaatgtcat 298  Q
    ||||||| ||||||||||||||||||||| ||||||| || || || ||||| ||||| || |||||||||||||||| ||||  ||| |||||||| ||    
T  8704992 ttcctgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtaaacaatgttat 8705091  T
Q  299 agcagaagttgatgtttgcaggtttgagccttgggaattacca 341  Q
    ||| ||||||||||| ||||  | ||| |||||||| ||||||    
T  8705092 agctgaagttgatgtatgcaactatgaaccttgggacttacca 8705134  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 451 - 523
Target Start/End: Complemental strand, 14372505 - 14372433
Alignment:
Q  451 taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 523  Q
    |||||||| ||||||| |||||||||||||||||||||  |||||| ||||| ||||||||||||| ||||||    
T  14372505 taaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa 14372433  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 8705222 - 8705294
Alignment:
Q  451 taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 523  Q
    |||||||| ||||||| ||||||||||| |||||||||  |||||||||||| || |||||||||| ||||||    
T  8705222 taaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa 8705294  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 8722051 - 8722211
Alignment:
Q  181 ctctcattcttgattttcttcctgtcggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttc 280  Q
    ||||||||| ||||| ||||||||| |||||||||||||  |||||| || |||| || || ||  |||| ||||  |||||||||||||| ||||        
T  8722051 ctctcattcatgattgtcttcctgttggattcagattccatccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaaga 8722150  T
Q  281 cgatgttaacaatgtcatagcagaagttgatgtttgcaggtttgagccttgggaattacca 341  Q
       |||||||||||||||||| ||||||||||| | || |||| | |||||||| ||||||    
T  8722151 gtttgttaacaatgtcatagctgaagttgatgtattcaagtttaaaccttgggatttacca 8722211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 523
Target Start/End: Original strand, 8740276 - 8740370
Alignment:
Q  429 tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 523  Q
    ||||| |||||||||||  | ||||||||  ||||||  |||||||||||||||||||||  ||| || ||||| ||||||||||||| ||||||    
T  8740276 tctttttcagctcgttcagtgataaaatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa 8740370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 8723641 - 8723729
Alignment:
Q  435 tcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa 523  Q
    |||||||||||| | ||||||||  ||||||  ||||||||||||||||| |||  ||| || ||||| ||||||||||||| ||||||    
T  8723641 tcagctcgttcggtgataaaatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaaggtttaa 8723729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 561
Target Start/End: Original strand, 8722262 - 8722409
Alignment:
Q  414 ttttgatataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagta 513  Q
    |||||||||| || |||| | ||||||| |||  | |||| |||  ||||| ||||||||||||||||||||||| |  |||| |||||   || | |||    
T  8722262 ttttgatatattcgttctgtttcagctcattcagtgataagatccgatgactcggaatggtttttcttgtgtcctcgcaattacaagtatcaaaggtgta 8722361  T
Q  514 aaaagtttaaccgagcaacggagttagggttttggaaagctactggaa 561  Q
    | ||||||||  ||| ||| ||||| || |||||||||||||||||||    
T  8722362 ataagtttaagagaggaacagagtttggattttggaaagctactggaa 8722409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 8723422 - 8723556
Alignment:
Q  207 ggattcagattccgaccaacaaatgaagaactagttaatcactacctcaagaacaagttacttggtaatgtttccgatgttaacaatgtcatagcagaag 306  Q
    |||||||||||  | ||||||  |||||| ||||||||||||||||| |  || ||||| ||||||||||   ||  ||| |||||||| ||||| ||||    
T  8723422 ggattcagattttgtccaacaggtgaagagctagttaatcactaccttagaaataagttgcttggtaatgacgccattgtaaacaatgttatagctgaag 8723521  T
Q  307 ttgatgtttgcaggtttgagccttgggaattacca 341  Q
    ||||| || ||| ||| || || ||||||||||||    
T  8723522 ttgatattcgcaagttcgaaccatgggaattacca 8723556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 524
Target Start/End: Original strand, 8690920 - 8691015
Alignment:
Q  429 tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac 524  Q
    ||||| |||||| ||||  | ||||||||  |||| || |||||||||||||| |||||| | ||||| || |||||||| ||||||| |||||||    
T  8690920 tctttttcagcttgttctttgataaaatccaatgatcccgaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac 8691015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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