View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299R-Insertion-3 (Length: 542)

Name: NF1299R-Insertion-3
Description: NF1299R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299R-Insertion-3
NF1299R-Insertion-3
[»] chr6 (1 HSPs)
chr6 (9-542)||(58358-58891)


Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 9 - 542
Target Start/End: Original strand, 58358 - 58891
Alignment:
Q  9 aataaaacattaaccaatattttctattcaattgtttgagtccttaaatatgttttcaaggtttaattgtccaaagtaaacatacactaagtaattgtta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58358 aataaaacattaaccaatattttctattcaattgtttgagtccttaaatatgttttcaaggtttaattgtccaaagtaaacatacactaagtaattgtta 58457  T
Q  109 tgtgaaatcgatttataacataagattttagtgatctatatactaatacaagaaagaagaatattggaatatttcaatatcaacaatattagtcttacgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58458 tgtgaaatcgatttataacataagattttagtgatctatatactaatacaagaaagaagaatattggaatatttcaatatcaacaatattagtcttacgc 58557  T
Q  209 tctgagtacaaaatttattgcttccaaaacaatatgaatgaaatttaaatgattgatattgcaactttgcatacaaaagaaaagaacacatgcttagttc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58558 tctgagtacaaaatttattgcttccaaaacaatatgaatgaaatttaaatgattgatattgcaactttgcatacaaaagaaaagaacacatgcttagttc 58657  T
Q  309 atttgatagtctcagctaatttcgacgcagtatgaatgtcnnnnnnncttatcaatacatatataataataatgaagatgaattggatgatttgacaata 408  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58658 atttgatagtctcagctaatttcgacgcagtatgaatgtcaaaaaaacttatcaatacatatataataataatgaagatgaattggatgatttgacaata 58757  T
Q  409 aactcctggagaataacaaaagctagaatgaaagggttacaaaagagcagtcttgtccttcaataaccatattgctcagataatttagaaacatttccta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58758 aactcctggagaataacaaaagctagaatgaaagggttacaaaagagcagtcttgtccttcaataaccatattgctcagataatttagaaacatttccta 58857  T
Q  509 tgcacaattgatggtccagactcatcatactcag 542  Q
    ||||||||||||||||||||||||||||||||||    
T  58858 tgcacaattgatggtccagactcatcatactcag 58891  T

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