View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299R-Insertion-4 (Length: 521)

Name: NF1299R-Insertion-4
Description: NF1299R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299R-Insertion-4
NF1299R-Insertion-4
[»] chr8 (1 HSPs)
chr8 (9-521)||(4327854-4328356)


Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 521
Target Start/End: Original strand, 4327854 - 4328356
Alignment:
Q  9 aattctacaatttcctccaaaactgcaggtatttgattccgactattttttaaaaactacttatattcattatttaattttgtttggcaaactaaaaata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4327854 aattctacaatttcctccaaaactgcaggtatttgattccgactatttcttaaaaactacttatattcattatttaattttgtttggtaaactaaaaata 4327953  T
Q  109 gatcaaaataatataacctattgtttttgtggctcttgaattcacttttaactgannnnnnnnaatattgtaactagatacacaagaacccacaacccta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||           
T  4327954 gatcaaaataatataacctattgtttttgtggctcttgaattcacttttaactgattttttttaatattgtaactagatacacaagaacccac------- 4328046  T
Q  209 aattcataagaatcgacaacccttcgtcgcctctatccccgtacctcccttatccatagtcccaacacgatgtagcattgatggtggtgatgctcacaat 308  Q
       ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328047 ---tcataagaatcgacaacccttcgtcgcctctgtccccctacctcccttatccatagtcccaacacgatgtagcattgatggtggtgatgctcacaat 4328143  T
Q  309 ccttcacaacgacaccacctctaaacccctcttgaggtagcaaaccctgggaatttctctggttgtttgatagatatgggttttggtttggatcgtgttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328144 ccttcacaacgacaccacctctaaacccctcttgaggtagcaaaccctgggaatttctctggttgtttgatagatatgggttttggtttggatcgtgttt 4328243  T
Q  409 tattcgtcgtagtcaatttgaatctcttagatcttggtttctgctcaaaccttgcatgggctgcctaaatttccactagcaaattcatgtccccgacatg 508  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4328244 tattcgtcgtagtcaatttgagtctcttagatcttggtttctgctcaaaccttgcatgggctgccaaaatttccactagcaaattcatgtccccgacatg 4328343  T
Q  509 ttctgtgttacta 521  Q
    |||||||||||||    
T  4328344 ttctgtgttacta 4328356  T

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