View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299R-Insertion-5 (Length: 502)

Name: NF1299R-Insertion-5
Description: NF1299R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299R-Insertion-5
NF1299R-Insertion-5
[»] chr3 (1 HSPs)
chr3 (9-502)||(55377309-55377815)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Complemental strand, 55377815 - 55377309
Alignment:
Q  9 aaaactagaggtaaggaattgagtgacggggcagtgttgaaataaaagaaatagaataatctcatctcacccttttcttatccgaatnnnnnnnnnnnnn 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                 
T  55377815 aaaattagaggtaaggaattgagtgacggggcagtgttgaaataaaagaaatagaataacctcatctcacccttttcttatccgaatgggggaagggggg 55377716  T
Q  109 atgttgtatcacccagaagagaagagaagaagcgtacccttgaatgaaatgaagttagttagtagttagttggt----aactcttattttttggagaaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||    
T  55377715 atgttgtatcacccagaagagaagagaagaagcgtacccttgaatgaaatgaagttagttagtagttagttagttagtaactcttattttttggagaaag 55377616  T
Q  205 gataatgtggtcatcatcgtcgtcgtgtttattgccacaattcatctgcaacccagacactttcatcaggatccctacccaccgccatcatcatcat--- 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||       
T  55377615 gataatgtggtcatcatcgtcgtcgtgtttattgccacaattcatctgcaacccagacactttcatcagaatccctacccaccggcatcatcatcatcat 55377516  T
Q  302 ------catctctttcttcttcagtgtatgcataaacaattctcnnnnnnnnnnnnnnnnnnnctcatttctcacctcactcttttctttttgatgcagc 395  Q
          ||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||    
T  55377515 catcatcatctctttcttcttcagtgtatgcataaacaattctctattatattatattatattctcatttctcacctcactcttttctttttgatgcagc 55377416  T
Q  396 acccaaaacaactacaacaagacactgtattttgtcttcttcaacggcactccttgatttcaaatttgatgttgctcctgctgaatctgaaaactcacca 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55377415 acccaaaacaactacaacaagacactgtattttgtcttcttcaacggcactccttgatttcaaatttgatgttgctcctgctgaatctgaaaactcacca 55377316  T
Q  496 ccttggc 502  Q
    |||||||    
T  55377315 ccttggc 55377309  T

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