View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299R-Insertion-6 (Length: 400)
Name: NF1299R-Insertion-6
Description: NF1299R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299R-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 21471692 - 21471522
Alignment:
| Q |
9 |
catagttcagttcagactcttagcgaccctagcacatcggtgatcgcttggctttttaatataaaaggacatatttaggtttgattcggagactatgtgg |
108 |
Q |
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| T |
21471692 |
catagttcagttcaaactcttagcgaccctagcacatcggtgatcgcttggctttttaatataaaaggacatatttaggttcgatttggagactatgtgg |
21471593 |
T |
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| Q |
109 |
ccaagtgtctctcccttcgcactaaataaataatatcatcccccctcctatattaatttcttaagaaaaca |
179 |
Q |
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| T |
21471592 |
ccaagtgtctctcccttcgcactaaataaataatatcatcccccctcccatattaatttcttaagaaaaca |
21471522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 220 - 400
Target Start/End: Complemental strand, 21471527 - 21471347
Alignment:
| Q |
220 |
aaaacatgattagttacttaagctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat |
319 |
Q |
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| T |
21471527 |
aaaacatgattagttacttaagctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaatg |
21471428 |
T |
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| Q |
320 |
cggtaaagacgtcaatccttttactaatgttatcccagtaaataaactaaaaagtactctcaaatcgttattatttcatcc |
400 |
Q |
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| T |
21471427 |
tggtaaggacgtcaatccttttactaatgttatcccactaaatatactaaaaagtactctcgaatcgttattatttcatcc |
21471347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 140 - 400
Target Start/End: Complemental strand, 21501729 - 21501461
Alignment:
| Q |
140 |
aatatcatcccccctcctatattaatttcttaagaaaacagatagataaaacaaaacatgattagtttcgtttgcagaacaaaacatgattagttactta |
239 |
Q |
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| T |
21501729 |
aatatcattccccctcccatattaatttcttaagaaaacagatagataaaacaaaacataattagttttttttacataacaaaacatgagtagttactta |
21501630 |
T |
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| Q |
240 |
a------gctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtc |
332 |
Q |
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| T |
21501629 |
actttaagctgaaattctagagattggatacacaacagctatgaaatcaataacactacgaaaatttgcataacatggtactaaatgcggtaaggacatc |
21501530 |
T |
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| Q |
333 |
aatccttttactaatgttatcccagtaaataaact-aaaaagtactctcaaatcgttattatttcatcc |
400 |
Q |
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| T |
21501529 |
tatccttttatcaatgttttcccaccacataaactaaaaaagtattctgaaatcattattatttcatcc |
21501461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 140 - 376
Target Start/End: Complemental strand, 46006432 - 46006184
Alignment:
| Q |
140 |
aatatcatcccccctcctatattaatttcttaagaaaacagatagataaaacaaaacatgattagtttcgtttg------cagaacaaaacatgattagt |
233 |
Q |
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| T |
46006432 |
aatatcattcctcctcccatgttaatttcttaagaaaacagatagataaaacaaaacatgattagttttttttttttttacataacaaaacattagtagt |
46006333 |
T |
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| Q |
234 |
tact-----taagctgaaattcaagagatcggatacacaacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaag |
327 |
Q |
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| T |
46006332 |
tactaactttaagcttaaattctagagattggatccacaacatctatgtaatcaataacacagcaaaaatttgcatatcatggtacaaaatgcggtaagg |
46006233 |
T |
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| Q |
328 |
acgtcaatccttttactaatgttatcccagtaaataaactaaaaagtac |
376 |
Q |
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| T |
46006232 |
acatcaatccttttattaatgttttaccaccaaatatactaaaaagtac |
46006184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 12829551 - 12829475
Alignment:
| Q |
267 |
aacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatcctttta |
342 |
Q |
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| T |
12829551 |
aacagctatgtaatcaataacacaacaaaaatttgcataacatggtacaaaatgcggtaagaacatcaatcctttta |
12829475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 12861530 - 12861454
Alignment:
| Q |
267 |
aacagctatgaagtcaataccacaacaaaaatttgcataacatggtactaaat-cggtaaagacgtcaatcctttta |
342 |
Q |
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| T |
12861530 |
aacagctatgtaatcaataacacaacaaaaatttgcataacatggtacaaaatgcggtaagaacatcaatcctttta |
12861454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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