View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_high_10 (Length: 368)
Name: NF1299_1D_high_10
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 168 - 352
Target Start/End: Original strand, 50756688 - 50756874
Alignment:
| Q |
168 |
gattcagtttgcttataccataataaaagggagggtctcaca--cacacactaggggcctcctcttgccattaaactaggggcctcctctatctatatat |
265 |
Q |
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| T |
50756688 |
gattcagtttgcttataccataataaaagggagggtctcacacacacacactaggggcctcctcttgccattaaactaggggcctcctctatctatatat |
50756787 |
T |
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| Q |
266 |
gagcagcactagcatgaaaaggggaaattaatattttcaacttgataggaattgaagtgaaatgacttgcattattgacttgatgtc |
352 |
Q |
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| T |
50756788 |
gagcagcactagcatgaaaaggggaaattaatattttcaacttgataggaattgaagtgaaatgacttgcattattgacttaatgtc |
50756874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 50756564 - 50756629
Alignment:
| Q |
1 |
tgatgtccttgaggtatttttcatttcttattcttatattattcatataaatatgtgttaacacaaaaatca |
72 |
Q |
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| T |
50756564 |
tgatgtccttgaggtatttttcttttctt-ttc-----ttattcatataaatatgtgttaacacaaaaatca |
50756629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 4320081 - 4319957
Alignment:
| Q |
224 |
ctcctcttgccattaaactaggggcctcctctatctatatatgagcagcactagcatgaaaaggggaaattaatattttcaacttgataggaattgaagt |
323 |
Q |
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| T |
4320081 |
ctcctcttgccattaaactaggggcctcctctatctatctatgagcagcactagcatgaaaagggga----aatattttcaacttgataggaattgaagt |
4319986 |
T |
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| Q |
324 |
gaaatgacttgcattattgacttgatgtc |
352 |
Q |
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| T |
4319985 |
gaaatgacttgcattattgacttaatgtc |
4319957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 4320117 - 4320079
Alignment:
| Q |
168 |
gattcagtttgcttataccataataaaagggagggtctc |
206 |
Q |
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| T |
4320117 |
gattcagtttgcttataccataataaaagggagggtctc |
4320079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4320315 - 4320278
Alignment:
| Q |
1 |
tgatgtccttgaggtatttttcatttcttattcttata |
38 |
Q |
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| T |
4320315 |
tgatgtccttgaggtatttttcttttcttattcatata |
4320278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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