View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1299_1D_high_3 (Length: 531)
Name: NF1299_1D_high_3
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 6085422 - 6085158
Alignment:
| Q |
24 |
tgttattcagaagatggaaggaagctgggatatgcgtctaagtggcatcacataaacacaacaaatttgaagtcggatcatgtttttgtctggtatgacc |
123 |
Q |
| |
|
||||||||| ||||| ||| || | ||||||||||||||||||||||||||| |||||| |||| ||||| || |||||| ||||||| |||||||| | |
|
|
| T |
6085422 |
tgttattcaaaagatcgaaagatggtgggatatgcgtctaagtggcatcacaaaaacaccacaagattgaattcagatcatatttttgtgtggtatgatc |
6085323 |
T |
|
| Q |
124 |
cgtatcattctgacaacatattgggaagtgatgaaacaaatgtttcatttgaattctctgttaccgatgatacaagcggaacaagtt----atagcttta |
219 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||||||||||| | ||||||||||||||| | || | | ||||||| |||| | | ||||| |
|
|
| T |
6085322 |
cgtacatttctgacatcatatgggaaagtgatgaaacaaatgttacttttgaattctctgtttctactgtttc-agcggaaggagtttataacaacttta |
6085224 |
T |
|
| Q |
220 |
tgacaatgacaatgaaagagtgtgggatctgcccagtttacttgtcagaaattcacatgcttttaa |
285 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||| |||| || |||||| |||| |||||||||| |
|
|
| T |
6085223 |
tgacagtcacaatgaaagaatgtgggatctgcccaatttatttctcagaatttcaaatgcttttaa |
6085158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 6060279 - 6060204
Alignment:
| Q |
223 |
caatgacaatgaaagagtgtgggatctgcccagtttacttgtcagaaattcacatgcttttaacctcgctaaattt |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||||||||| |||| ||||||| |||| | |||||||| |
|
|
| T |
6060279 |
caatgccaatgaaagagtgtgggatctgcccaatttatttgtcagaatttcatatgctttcaaccacactaaattt |
6060204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 6085079 - 6085028
Alignment:
| Q |
331 |
atgaagaggtatccagtttcattgaatcaagtgacacatgtggtggggagtc |
382 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6085079 |
atgaggaggtatgcagttacattgaatcaagtgacacatgtggtggggagtc |
6085028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 6060431 - 6060340
Alignment:
| Q |
62 |
taagtggcatcacataaacacaacaaatttgaagtcggatcatgtttttgtctggtatgacccgtatcattctgacaacatattgggaagtg |
153 |
Q |
| |
|
||||||| |||| | |||||| ||||| ||||| ||||||||||| ||||| |||||||| || || | |||||||| ||||||| |||||| |
|
|
| T |
6060431 |
taagtggaatcataaaaacaccacaaaattgaaatcggatcatgtgtttgtgtggtatgatccatacctttctgacaccatattgagaagtg |
6060340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University