View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_1 (Length: 657)
Name: NF1299_1D_low_1
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 24 - 640
Target Start/End: Complemental strand, 5167034 - 5166420
Alignment:
| Q |
24 |
agtacattatatttattttatttgttgtgattaagtttacaaattgtagtgataattgatatggattgatgtttgaacattgattttgttgtgctcattg |
123 |
Q |
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| T |
5167034 |
agtacattatatttattttatttgttgtgattaagtttacaaattgtagtgataattgatatggattgatgtttgaacattgattttgttgtgctcattg |
5166935 |
T |
|
| Q |
124 |
tgaaggttggtattgaggagtgatttctattagcttcaatttcaaaaggaaaagattcatagtttttccccattttacaatttgattgctgtggaagatg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5166934 |
tgaaggttggtattgaggagtgatttctattagcttcaatttcaaaaggaaaagattcatagtttttccccattttacaatttgattgctgtggaagatg |
5166835 |
T |
|
| Q |
224 |
ttgtgcgcttgttctggagagcaacacaaatttgaagaggcaccacagtcaccggattccctagcaacaagggatttctctgctagtgggttatcttcaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5166834 |
ttgtgcgcttgttctggagagcaacacaaatttgaagaggcaccacagtcaccggattccctagcaacaagggatttctctgctagtgggttatcttcaa |
5166735 |
T |
|
| Q |
324 |
ggacgggagattgggattcaaaactaaatgaaaatcaagttgaagatgctgaatcttctctaaaagaagccgcctcattaaactatgaggtagaaattaa |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5166734 |
ggacgggagattgggattcaaaactaaatgaaaatcaagttgaagatgctgaatcttctctaaaagaagccgcctcattaaactatgaggtagaaattaa |
5166635 |
T |
|
| Q |
424 |
agaacctttactctctaacaacattttcaattttcatttcaattcgtattgtgtttgtgggtggctgaaattacatttggttatgaattttccttttgaa |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5166634 |
agaacctttactctctaacaacattttcaattttcatttcaattcgtattgtgtttgtgggtggctgaaattacatttggttatgaattttccttttgaa |
5166535 |
T |
|
| Q |
524 |
ttgtgatagagtgaagattgaaacagactagagagaatgtgttttcggaaacactgtaaacaatgttttgaannnnnnnagaattttcaaaaatttccat |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
5166534 |
ttgtgatagagtgaagattgaaacagactagagagaatgtgttttcggaaacac--taaacaatgttttgaatttttttagaattttcaaaaatttccat |
5166437 |
T |
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| Q |
624 |
aatgtcttctctgatgt |
640 |
Q |
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||||||||||||||||| |
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| T |
5166436 |
aatgtcttctctgatgt |
5166420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 547
Target Start/End: Original strand, 9528951 - 9529006
Alignment:
| Q |
492 |
aattacatttggttatgaattttccttttgaattgtgatagagtgaagattgaaac |
547 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||||| |||||| ||||| |
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| T |
9528951 |
aattacatttgattatgaattttccttttcagttgtgatagagagaagatggaaac |
9529006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 20236674 - 20236714
Alignment:
| Q |
498 |
atttggttatgaattttccttttgaattgtgatagagtgaa |
538 |
Q |
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| T |
20236674 |
atttggttatgaattttcctcttcaattgagatagagtgaa |
20236714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 22130658 - 22130698
Alignment:
| Q |
498 |
atttggttatgaattttccttttgaattgtgatagagtgaa |
538 |
Q |
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| T |
22130658 |
atttggttatgaattttcctcttcaattgagatagagtgaa |
22130698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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