View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_12 (Length: 335)
Name: NF1299_1D_low_12
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 23333528 - 23333847
Alignment:
| Q |
1 |
ttttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333528 |
ttttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataa |
23333627 |
T |
|
| Q |
101 |
tatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23333628 |
tatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatc |
23333727 |
T |
|
| Q |
201 |
atgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaattttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23333728 |
atgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattttat |
23333827 |
T |
|
| Q |
301 |
cggtcaacttcgtgatgtcc |
320 |
Q |
| |
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||||||||||||| |||||| |
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| T |
23333828 |
cggtcaacttcgttatgtcc |
23333847 |
T |
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