View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_14 (Length: 291)
Name: NF1299_1D_low_14
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 13651511 - 13651785
Alignment:
| Q |
1 |
atcttcacataacattcctaaacactgagtacatccacaacagactcattaatttgaat---gatgatgttaaatcaatttcacaatgttaccctaagct |
97 |
Q |
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| T |
13651511 |
atcttcacataacattcctaaacactgaatacatccacaacagactcattagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagct |
13651610 |
T |
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| Q |
98 |
tcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaag |
197 |
Q |
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| T |
13651611 |
tcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaag |
13651710 |
T |
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| Q |
198 |
ccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
272 |
Q |
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| T |
13651711 |
ccttctttgagagacattattgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
13651785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 82 - 272
Target Start/End: Original strand, 13656840 - 13657030
Alignment:
| Q |
82 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
181 |
Q |
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| T |
13656840 |
aatgttaccctaagcttcaattcaagaccatctctgattttcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcact |
13656939 |
T |
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| Q |
182 |
aaatatgtatggtaagccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
272 |
Q |
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| T |
13656940 |
gagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgct |
13657030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 272
Target Start/End: Original strand, 13646514 - 13646704
Alignment:
| Q |
82 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
181 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||||||||||| || | ||||||||| | || | |
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| T |
13646514 |
aatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggatttggagaaaggataggtgatgtaattacgtcact |
13646613 |
T |
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| Q |
182 |
aaatatgtatggtaagccttctttgagagacattgttgtctctgagaaaataagttgcattattttagatggaggttttggtgaccttgct |
272 |
Q |
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| T |
13646614 |
gagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaatatttggtgatcttgct |
13646704 |
T |
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