View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_15 (Length: 290)
Name: NF1299_1D_low_15
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_15 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 59210 - 58981
Alignment:
| Q |
5 |
gacatcaggaaagacctgtatggtaacattgtcctatcaggaggtacaaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59210 |
gacatcaggaaagacctgtatggtaacattgtcctatcaggaggtacaaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattag |
59111 |
T |
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| Q |
105 |
caccaagtagcatgaagatcaaggtggtagcaccgcctgagagaaagtacagtgtctggattggtggttctatcttggcatccctaagctccttccaaca |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
59110 |
caccaagtagcatgaagatcaaggtggtagcaccgcctgagagaaagtacagtgtctggattggtggttctatcttggcatccctaagcaccttccaaca |
59011 |
T |
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| Q |
205 |
ggtttgttcttttctttgttgctcggagat |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
59010 |
ggtttgttcttttctttgttgctcggagat |
58981 |
T |
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Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 8689986 - 8690190
Alignment:
| Q |
8 |
atcaggaaagacctgtatggtaacattgtcctatcaggaggtacaaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattagcac |
107 |
Q |
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| T |
8689986 |
atcaggaaagacttgtacggtaacattgtgctttcaggaggaactaccatgttcccaggcattgctgatagaatgagcaaggaaatttctgctttggccc |
8690085 |
T |
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| Q |
108 |
caagtagcatgaagatcaaggtggtagcaccgcctgagagaaagtacagtgtctggattggtggttctatcttggcatccctaagctccttccaacaggt |
207 |
Q |
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| T |
8690086 |
caagtagcatgaagatcaaggtggttgcaccacctgagagaaaatacagtgtctggatcggaggttccatcttggcatctcttagcaccttccagcaggt |
8690185 |
T |
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| Q |
208 |
ttgtt |
212 |
Q |
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||||| |
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| T |
8690186 |
ttgtt |
8690190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 37050345 - 37050189
Alignment:
| Q |
51 |
caaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattagcaccaagtagcatgaagatcaaggtggtagcaccgcctgagagaaa |
150 |
Q |
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| T |
37050345 |
caacaatgttccctggtattgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggttgtagcaccaccagagaggaa |
37050246 |
T |
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| Q |
151 |
gtacagtgtctggattggtggttctatcttggcatccctaagctccttccaacaggt |
207 |
Q |
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| T |
37050245 |
gtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
37050189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 6703640 - 6703594
Alignment:
| Q |
238 |
ttaggtcttgttctcttgttctccccatttgcacaatcgttcatctc |
284 |
Q |
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| T |
6703640 |
ttaggtcttgttctcttgttctccccatttgcaccatccttcttctc |
6703594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 68640 - 68800
Alignment:
| Q |
47 |
ggtacaaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattagcaccaagtagcatgaagatcaaggtggtagcaccgcctgaga |
146 |
Q |
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| T |
68640 |
ggtacgactatgttccccggcattgctgataggatgagcaaggagatcacagcattggcaccaagtagcatgaaaattaaggtggttgcaccaccagaga |
68739 |
T |
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| Q |
147 |
gaaagtacagtgtctggattggtggttctatcttggcatccctaagctccttccaacaggt |
207 |
Q |
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| T |
68740 |
ggaagtatagtgtctggattggaggctccattttggcttccctcagcaccttccaacaggt |
68800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 41388565 - 41388737
Alignment:
| Q |
8 |
atcaggaaagacctgtatggtaacattgtcctatcaggaggtacaaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattagcac |
107 |
Q |
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| T |
41388565 |
atcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtattgctgacagaatgagcaaggaaattaccgcgttggccc |
41388664 |
T |
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| Q |
108 |
caagtagcatgaagatcaaggtggtagcaccgcctgagagaaagtacagtgtctggattggtggttctatctt |
180 |
Q |
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| T |
41388665 |
caagcagcatgaagatcaaggtggttgctccacccgagagaaaatacagtgtctggattggtggctctatctt |
41388737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 207
Target Start/End: Complemental strand, 1262017 - 1261854
Alignment:
| Q |
44 |
ggaggtacaaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattagcaccaagtagcatgaagatcaaggtggtagcaccgcctg |
143 |
Q |
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| T |
1262017 |
ggaggttctaccatgtttcctggaattgctgaccgtatgagcaaggaaatcagtgctcttgctccaagtagcatgaaaatcaaggtggttgcacctcctg |
1261918 |
T |
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| Q |
144 |
agagaaagtacagtgtctggattggtggttctatcttggcatccctaagctccttccaacaggt |
207 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| || || |||| |||||||| |
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| T |
1261917 |
agaggaagtacagtgtctggattggtgggtctatcttggcatcactcagtacctttcaacaggt |
1261854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 43647031 - 43646914
Alignment:
| Q |
51 |
caaccatgtttcctggcattgctgatagaatgagcaaggagatttctgcattagcaccaagtagcatgaagatcaaggtggtagcaccgcctgagagaaa |
150 |
Q |
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|||| ||||| ||||| |||||||| | |||||||||||||| |||| | || || || ||||||||||| ||||| || || || || |||||||| |
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| T |
43647031 |
caactatgttccctggtattgctgaccgtatgagcaaggagatcactgccctggctcctagcagcatgaagattaaggttgtggctccaccagagagaaa |
43646932 |
T |
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| Q |
151 |
gtacagtgtctggattgg |
168 |
Q |
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|||||||||||||||||| |
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| T |
43646931 |
gtacagtgtctggattgg |
43646914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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