View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_2 (Length: 594)
Name: NF1299_1D_low_2
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 23 - 572
Target Start/End: Original strand, 38161291 - 38161840
Alignment:
| Q |
23 |
ccaaaaccagcagcaatatcaagcaaagtactaaccctcggatcacaaggtccaggagtagtcttacaaaaactattgatcccttcatcaagagtaacct |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38161291 |
ccaaaaccagcagcaatatcaagcaaagtactaaccctcggatcacaaggtccaggagtagtcttacaaaaactattgatcccttcatcaagagtaacct |
38161390 |
T |
|
| Q |
123 |
ttacacttttcccaaaagaaggcaaaggaccctgcaacttattattatccaaagaaacattagccaaactcgataaactcatcaaagaggatggaacaac |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38161391 |
ttacacttttcccaaaagaaggcaaaggaccctgcaacttattattatccaaagaaacattcgccaaactcgataaactcatcaaagaggatggaacaac |
38161490 |
T |
|
| Q |
223 |
acctgttaactgattatcacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattgaaccagtaaacttattcttctgaaaccaaact |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38161491 |
acctgttaactgattatcacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattgaaccagtaaacttattcttctgaaaccaaact |
38161590 |
T |
|
| Q |
323 |
tgagccaaatgcgacatcgacgcaagcaaatcaattgaaccggtaaaaccagacccgtcattctgattattgagccacaaattcacaatcccagatcctg |
422 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38161591 |
tgagccaaatgcgacatagacgcaagcaaatcaattgaaccggtaaaaccagacccgtcattctgattattgagccacaaattcacaatcccagatcctg |
38161690 |
T |
|
| Q |
423 |
aaaacgagttaggtagatctccagtgagattattgtaagataacctcagattctgcaaactaaccaacggagcgaaaatatccggcaatgaaccaatgag |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38161691 |
aaaacgagttaggtagatctccagtgagattattgtaagataacctcagattctgcaaactaaccaacggaacgaaaatatccggcaatgaaccaatgag |
38161790 |
T |
|
| Q |
523 |
atttgtttggcctaggtcaagctcaacgagattcgaagactgagtgaaat |
572 |
Q |
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| T |
38161791 |
atttgtttggcctaggtcaagctcaacgagattcgaagactgagtgaaat |
38161840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 124 - 401
Target Start/End: Complemental strand, 31437791 - 31437514
Alignment:
| Q |
124 |
tacacttttcccaaaagaaggcaaaggaccctgcaacttattattatccaaagaaacattagccaaactcgataaactcatcaaagaggatggaacaaca |
223 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||| | ||| || ||||| | ||| || |||||| || ||| ||| ||||| | ||||||||| |
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| T |
31437791 |
tacacctttcccaaaagaaggaaaaggaccctgcaattgattgttgtccaaggtaacgtttcgcaaactggacaaaaccattaaagaaggcggaacaaca |
31437692 |
T |
|
| Q |
224 |
cctgttaactgattatcacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattgaaccagtaaacttattcttctgaaaccaaactt |
323 |
Q |
| |
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||||||||||||||||| ||||| || |||||||| || || ||||| || ||||||||||||||| |||||| ||||| |||||| || |||||||| |
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| T |
31437691 |
cctgttaactgattatcccgaagttgtagatcaaataaattggtacacttggacaaatcaggaatttcaccagtgaacttgttcttcataagccaaactt |
31437592 |
T |
|
| Q |
324 |
gagccaaatgcgacatcgacgcaagcaaatcaattgaaccggtaaaaccagacccgtcattctgattattgagccaca |
401 |
Q |
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| T |
31437591 |
gagccgcgtgagtcattgaagcaagcacgtcaatagagcctgtaaacccgaacatgtcgttctgattattgagccaca |
31437514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 350
Target Start/End: Complemental strand, 15062123 - 15061898
Alignment:
| Q |
125 |
acacttttcccaaaagaaggcaaaggaccctgcaacttattattatccaaagaaacattagccaaactcgataaactcatcaaagaggatggaacaacac |
224 |
Q |
| |
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|||| ||| ||||||||||| ||||| || ||||| | ||| || ||||| ||||| || ||| || || ||| ||| ||||| ||||||||||||| |
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| T |
15062123 |
acacctttgccaaaagaaggaaaagggccttgcaaatgattgttgtccaaggaaacgttcttcaagctagacaaagccattaaagaagatggaacaacac |
15062024 |
T |
|
| Q |
225 |
ctgttaactgattatcacgaagctgaagatcaaacaagttagtacaattagacaaatcaggaattgaaccagtaaacttattcttctgaaaccaaacttg |
324 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| || | ||||| || || ||||| |||||| |||||||||||| || ||| || |||||| || |
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| T |
15062023 |
ctgttaactgattatcccgaagctgcagatcaaataaatcggtacagttggagaaatcgggaatttgaccagtaaacttgttattcataagccaaacctg |
15061924 |
T |
|
| Q |
325 |
agccaaatgcgacatcgacgcaagca |
350 |
Q |
| |
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|| ||| || | |||||| ||||||| |
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| T |
15061923 |
agtcaactgagtcatcgaagcaagca |
15061898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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