View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_28 (Length: 211)
Name: NF1299_1D_low_28
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 21470616 - 21470791
Alignment:
| Q |
32 |
tgtgataacatccctcaaggggcatgatgataaaattagagtggttttgaacaaggcagaccaagttgatactcaacaagtaagataacatttcgcaatt |
131 |
Q |
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| T |
21470616 |
tgtgataacatccctcaaggggcatgatgataaaattagagtggttttaaacaaggcagaccaagttgatactcaacaggtaagataacattaaacaatt |
21470715 |
T |
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| Q |
132 |
catcttgtatttgtttgcttagcaaatattttgaaacatagtcggagaatataactttatatataattgtgtgccc |
207 |
Q |
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| T |
21470716 |
cattttgtatttgtttgcttagcaaatattttgaaacatagtcggagaatataattttatatataattgtgtgccc |
21470791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 21500507 - 21500648
Alignment:
| Q |
32 |
tgtgataacatccctcaaggggcatgatgataaaattagagtggttttgaacaaggcagaccaagttgatactcaacaagtaagataacatttcgcaatt |
131 |
Q |
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| T |
21500507 |
tgtgataacatccctaaaggggcatgatgataaaattagagtggttttgaacaaggcagaccaagttgatactcaacaagtaagataacattaagcaatt |
21500606 |
T |
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| Q |
132 |
catcttgtatttgtttgcttagcaaatattttgaaacatagt |
173 |
Q |
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| T |
21500607 |
aatcttctatttgttggcctagcaatatttttgaaacatagt |
21500648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 40922117 - 40922178
Alignment:
| Q |
54 |
catgatgataaaattagagtggttttgaacaaggcagaccaagttgatactcaacaagtaag |
115 |
Q |
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| T |
40922117 |
catgatgacaaaattcgagtggttttgaacaaggcagatcaagttgatactcagcaagtaag |
40922178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 8959717 - 8959758
Alignment:
| Q |
72 |
gtggttttgaacaaggcagaccaagttgatactcaacaagta |
113 |
Q |
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| T |
8959717 |
gtggttttgaataagtcagaccaagttgatactcaacaagta |
8959758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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