View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_29 (Length: 208)
Name: NF1299_1D_low_29
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 30438509 - 30438701
Alignment:
| Q |
1 |
tttgccacaagttcaacaacctagtataaatacaatttaggtaaaacctacatcccaaaacgaatacagtt-----cacctcatgtaagagaaattttcc |
95 |
Q |
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| T |
30438509 |
tttgccacaagttccacaaccgagcataaatacaatttaggtaaaacctacatcccaaaacgaatacagtttatgccacctcaggtaagagaaattttcc |
30438608 |
T |
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| Q |
96 |
acaagttctacaaccgagcataaataaaattaaggttaaacctgacggatacagtttatgctttctcgatgaagagaacttcgccacaagttc |
188 |
Q |
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| T |
30438609 |
acaagttctacaaccgagtataaataaaattaaggttaaacctgacggatacagtttatgctttctcgatgaagagaacttcgccacaagttc |
30438701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 30438504 - 30438557
Alignment:
| Q |
85 |
agaaattttccacaagttctacaaccgagcataaataaaattaaggttaaacct |
138 |
Q |
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|||| ||| |||||||||| ||||||||||||||||| |||| |||| |||||| |
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| T |
30438504 |
agaactttgccacaagttccacaaccgagcataaatacaatttaggtaaaacct |
30438557 |
T |
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