View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_5 (Length: 491)
Name: NF1299_1D_low_5
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Original strand, 11717454 - 11717927
Alignment:
| Q |
20 |
catcaaatagcaaaccaaacatctgatacgcccagtttagcccccgaatgaagccaccta--acactggtggctgaaccttactcagaaacattagacaa |
117 |
Q |
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| T |
11717454 |
catcaaatagcaaaccaaacatctgatacgcccagtttagcccccgaatgaagccacctataacactggtggctgaaccttactcagaaacattagacaa |
11717553 |
T |
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| Q |
118 |
tatagctattgtgagagtttaattcctataatattttccagttatacatttctaaaccattgttaagagttttcctttggtcttgtgactttttaactct |
217 |
Q |
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| T |
11717554 |
tatagctattgtgagagtttaattcctttaatattttccagttatacatttctaaaccattgttaagagttttcctttggtcttgtgactttttaactct |
11717653 |
T |
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| Q |
218 |
ctaacttaattttatgctttatatataggatggcatgttaaaacataaaggcacatatgaaataatatctcctgaggatattggtcttgaaagatccatt |
317 |
Q |
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| T |
11717654 |
ctaacttaattttatgctttatatataggatggcatgttaaaacataaaggcacatatgaaataatatctcctgaggatattggtcttgaaagatccatt |
11717753 |
T |
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| Q |
318 |
gaggctagtattgtattggggaaacttaggtatgtcatttggcctttttcaaattaactattattaggcaaggttaagaactttataaggatttaaaaga |
417 |
Q |
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| T |
11717754 |
gaggctagtattgtattggggaaacttaggtatgtcatttggcccttttcaaattaactattattaggcaaggttaagaactttataaggatttaaaaga |
11717853 |
T |
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| Q |
418 |
gataataggatatataaaatccaacataatacacaagtttataaaattttcctttctcaagttttaatattaaa |
491 |
Q |
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| T |
11717854 |
gataataggatatataaaatccaacataatacagaagtttataaaattttcctttctcaagttttaatattaaa |
11717927 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 352
Target Start/End: Original strand, 52696403 - 52696512
Alignment:
| Q |
243 |
taggatggcatgttaaaacataaaggcacatatgaaataatatctcctgaggatattggtcttgaaagatccattgaggctagtattgtattggggaaac |
342 |
Q |
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| T |
52696403 |
taggatggaatgctcaaacacaaaggtacatacgaaatcatatctcctgaagacattggacttgaaagatccaacgaagctggtattgtattggggaagc |
52696502 |
T |
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| Q |
343 |
ttaggtatgt |
352 |
Q |
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| T |
52696503 |
ttaggtatgt |
52696512 |
T |
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