View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_6 (Length: 443)
Name: NF1299_1D_low_6
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 21471323 - 21471527
Alignment:
| Q |
5 |
aagcttgaaagataacgggcatagggatgaaataataacgatttgagagtactttttagtttatttactgggataacattagtaaaaggattgacgtctt |
104 |
Q |
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| T |
21471323 |
aagcttgaaagataactggcatagggatgaaataataacgattcgagagtactttttagtatatttagtgggataacattagtaaaaggattgacgtcct |
21471422 |
T |
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| Q |
105 |
taccgatttagtaccatgttatgcaaatttttgttgtggtattgacttcatagctgttgtgtatccgatctcttgaatttcagcttaagtaactaatcat |
204 |
Q |
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| T |
21471423 |
taccacattagtaccatgttatgcaaatttttgttgtggtattgacttcatagctgttgtgtatccgatctcttgaatttcagcttaagtaactaatcat |
21471522 |
T |
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| Q |
205 |
gtttt |
209 |
Q |
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||||| |
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| T |
21471523 |
gtttt |
21471527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 250 - 420
Target Start/End: Original strand, 21471522 - 21471692
Alignment:
| Q |
250 |
tgttttcttaagaaattaatataggaggggggatgatattatttatttagtgcgaagggagagacacttggccacatagtctccgaatcaaacctaaata |
349 |
Q |
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| T |
21471522 |
tgttttcttaagaaattaatatgggaggggggatgatattatttatttagtgcgaagggagagacacttggccacatagtctccaaatcgaacctaaata |
21471621 |
T |
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| Q |
350 |
tgtccttttatattaaaaagccaagcgatcaccgatgtgctagggtcgctaagagtctgaactgaactatg |
420 |
Q |
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| T |
21471622 |
tgtccttttatattaaaaagccaagcgatcaccgatgtgctagggtcgctaagagtttgaactgaactatg |
21471692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 21501441 - 21501729
Alignment:
| Q |
9 |
ttgaaagataacgggcatagggatgaaataataacgatttgagagtacttttt-agtttatttactgggataacattagtaaaaggattgacgtctttac |
107 |
Q |
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| T |
21501441 |
ttgaaagataattggcatgtggatgaaataataatgatttcagaatacttttttagtttatgtggtgggaaaacattgataaaaggatagatgtccttac |
21501540 |
T |
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| Q |
108 |
cg-atttagtaccatgttatgcaaatttttgttgtggtattgacttcatagctgttgtgtatccgatctcttgaatttcagc------ttaagtaactaa |
200 |
Q |
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| T |
21501541 |
cgcatttagtaccatgttatgcaaattttcgtagtgttattgatttcatagctgttgtgtatccaatctctagaatttcagcttaaagttaagtaactac |
21501640 |
T |
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| Q |
201 |
tcatgttttgttctgcaaacgaaactaatcatgttttgttttatctatctgttttcttaagaaattaatataggaggggggatgatatt |
289 |
Q |
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| T |
21501641 |
tcatgttttgttatgtaaaaaaaactaattatgttttgttttatctatctgttttcttaagaaattaatatgggagggggaatgatatt |
21501729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 289
Target Start/End: Original strand, 46006184 - 46006432
Alignment:
| Q |
53 |
gtactttttagtttatttactgggataacattagtaaaaggattgacgtctttaccg-atttagtaccatgttatgcaaatttttgttgtggtattgact |
151 |
Q |
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| T |
46006184 |
gtactttttagtatatttggtggtaaaacattaataaaaggattgatgtccttaccgcattttgtaccatgatatgcaaatttttgctgtgttattgatt |
46006283 |
T |
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| Q |
152 |
tcatagctgttgtgtatccgatctcttgaatttcagctta-----agtaactaatcatgttttgttctg------caaacgaaactaatcatgttttgtt |
240 |
Q |
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| T |
46006284 |
acatagatgttgtggatccaatctctagaatttaagcttaaagttagtaactactaatgttttgttatgtaaaaaaaaaaaaaactaatcatgttttgtt |
46006383 |
T |
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| Q |
241 |
ttatctatctgttttcttaagaaattaatataggaggggggatgatatt |
289 |
Q |
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| T |
46006384 |
ttatctatctgttttcttaagaaattaacatgggaggaggaatgatatt |
46006432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 12829475 - 12829551
Alignment:
| Q |
87 |
taaaaggattgacgtctttaccg-atttagtaccatgttatgcaaatttttgttgtggtattgacttcatagctgtt |
162 |
Q |
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| T |
12829475 |
taaaaggattgatgttcttaccgcattttgtaccatgttatgcaaatttttgttgtgttattgattacatagctgtt |
12829551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 12861454 - 12861530
Alignment:
| Q |
87 |
taaaaggattgacgtctttaccg-atttagtaccatgttatgcaaatttttgttgtggtattgacttcatagctgtt |
162 |
Q |
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| T |
12861454 |
taaaaggattgatgttcttaccgcattttgtaccatgttatgcaaatttttgttgtgttattgattacatagctgtt |
12861530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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