View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_7 (Length: 427)
Name: NF1299_1D_low_7
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 37 - 427
Target Start/End: Complemental strand, 11718336 - 11717938
Alignment:
| Q |
37 |
aaataacacatgaaacaaaattaacaaaaagtaaatatgcttttattgaatatgaatgaaatg--atgattacctcttcaagtctttttcttaatgcttg |
134 |
Q |
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| T |
11718336 |
aaataacacatgaaacaaaattaacaaatagttaatatgcttttattgcatatgaatgaaatgtgatgattacctcttcaagtctttttcttaatgcctg |
11718237 |
T |
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| Q |
135 |
gcgtccgctgtaacaattggtgtaaaagttcatgaaatgataaaacatgtcacaaaataattgtacatttactaatgaaattaacaattagcacaaaact |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11718236 |
gcgtccgctgtaacaattggtgtaaaagttcatgaaatgataaaacatgtcacaaaataattgtacagttactaatgaaattaacaattagcacaaaact |
11718137 |
T |
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| Q |
235 |
ataagcaaagtataagcattatatatgctgaggtccgagtttgaatcccaaactccttacttattcaccattaaaggtgaaattatagtcggtagactat |
334 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11718136 |
ataagcaaaatataagcattatatatgctgaggtccgggttcgaatcccaaactccttacttattcaccattaaaggtgaaattatagtcggtagactac |
11718037 |
T |
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| Q |
335 |
ttgnnnnnnnntaaaacggtatctcctc------aagtatattttgtacacttaatttgtatatagattaagaataaattaaggaaaccattatttttt |
427 |
Q |
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||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11718036 |
ttgaaaaaaaataaaacggtatctcttcaatcagaagtatattttgtacacttaatttgtatatagattaagaataaattaaggaaaacattatttttt |
11717938 |
T |
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