View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_1D_low_8 (Length: 400)
Name: NF1299_1D_low_8
Description: NF1299_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_1D_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 5166443 - 5166058
Alignment:
| Q |
1 |
tttccataatgtcttctctgatgtttattttatcggtggaaatggaaacaggaaacaccaacataccataacgtgtttctttatttatttatgaagttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5166443 |
tttccataatgtcttctctgatgtttattttatcggtggaaatggaaacaggaaacaccaacataccataacgtgtttctttatttatttatgaagttgt |
5166344 |
T |
|
| Q |
101 |
ttgtcataatagcttatggttattttctgctaatattaattggagttgtactagtaactgtgctttgatgttattttctgcnnnnnnnaattatgaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
5166343 |
ttgtcataatagcttatggttattttctgctaatattaattggagttgtactagtaactgtgttttgatgttattttctgctttttttaattatgaattt |
5166244 |
T |
|
| Q |
201 |
taaggaagctagagcattgttggggaggcttgaatatcaaagagggaactttgaagctgccctacacgtgcttcagggtattgacatcagtactttgacc |
300 |
Q |
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| T |
5166243 |
taaggaagctagagcattgttggggaggcttgaatatcaaagagggaactttgaagctgccctacacgtgcttcagggtattgacatcagtactttgacc |
5166144 |
T |
|
| Q |
301 |
ccaaggatgatcagggctattgctgaaagaaacaagctaaggaaacctcggtccaaagcgggtactgtgcttcctaatttgatgtc |
386 |
Q |
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| T |
5166143 |
ccaaggatgatcagggctattgctgaaagaaacaagctaaggaaacctcggtccaaagcgggtactgtgcttcctaatttgatgtc |
5166058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 4301121 - 4301068
Alignment:
| Q |
7 |
taatgtcttctctgatgtttattttatcggtggaaatggaaacaggaaacacca |
60 |
Q |
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| T |
4301121 |
taatgccttctctaaggtttattttatcagtagaaatggaaacaggaaacacca |
4301068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 14335339 - 14335387
Alignment:
| Q |
2 |
ttccataatgtcttctctgatgtttattttatcggtggaaatggaaaca |
50 |
Q |
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|||||||||||||||||| |||||||||||||| | | ||||||||||| |
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| T |
14335339 |
ttccataatgtcttctctaatgtttattttatctgggaaaatggaaaca |
14335387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 39153803 - 39153749
Alignment:
| Q |
5 |
cataatgtcttctctgatgtttattttatcggtggaaatggaaacaggaaacacc |
59 |
Q |
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||||||||||||||| || || ||||||| | |||||||||||||||||||||| |
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| T |
39153803 |
cataatgtcttctctaatattcattttattagaggaaatggaaacaggaaacacc |
39153749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 2810083 - 2810136
Alignment:
| Q |
5 |
cataatgtcttctctgatgtttattttatcggtggaaatggaaacaggaaacac |
58 |
Q |
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||||||||||||||| ||||||||||||| ||||||||| | |||||||||| |
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| T |
2810083 |
cataatgtcttctctaatgtttattttataagtggaaatgaagtcaggaaacac |
2810136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 9834213 - 9834262
Alignment:
| Q |
10 |
tgtcttctctgatgttt-attttatcggtggaaatggaaacaggaaacac |
58 |
Q |
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|||||||||| |||||| |||||||| ||||||||||||||| ||||||| |
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| T |
9834213 |
tgtcttctctaatgttttattttatcagtggaaatggaaacatgaaacac |
9834262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 9845094 - 9845143
Alignment:
| Q |
10 |
tgtcttctctgatgttt-attttatcggtggaaatggaaacaggaaacac |
58 |
Q |
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|||||||||| |||||| |||||||| ||||||||||||||| ||||||| |
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| T |
9845094 |
tgtcttctctaatgttttattttatcagtggaaatggaaacatgaaacac |
9845143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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