View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1299_2D_high_11 (Length: 690)
Name: NF1299_2D_high_11
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 20 - 683
Target Start/End: Complemental strand, 1088041 - 1087378
Alignment:
| Q |
20 |
ccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
1088041 |
ccaagcatttattcttacaattctcaagtgtcatatttgcatcaacccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaactatc |
1087942 |
T |
|
| Q |
120 |
attcaccccacatctccaatcttcttcacctttgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgatttaggctcaaacccatct |
219 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1087941 |
attcactccacatctccaatcttcgtcacctttgcgcacacatccttgtgtccaatttgatgcgtcccaattttttggcgatttaggctcaaacccatct |
1087842 |
T |
|
| Q |
220 |
aaacattggcaaattggagactcgttatgaacgcaatttccataagggccacaacgattatagacatcacaatcatcttttggcactgactcaataacac |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1087841 |
aaacattggcaaattggagactcgttatgaacgcaatttccataagggccacaacgattatagacatcacaatcatcttttggcaacgactcaataacac |
1087742 |
T |
|
| Q |
320 |
tccaagtatcgtcttctggaatccaattaacacgttctcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087741 |
tccaagtatcgtcttctggaatccaattaacacgttcgcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
1087642 |
T |
|
| Q |
420 |
tatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactccattccaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087641 |
tatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactccattccaa |
1087542 |
T |
|
| Q |
520 |
gggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaatctcccgaagatggatcgt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087541 |
gggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaatctcccgaagatggatcgt |
1087442 |
T |
|
| Q |
620 |
cccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087441 |
cccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
1087378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 683
Target Start/End: Complemental strand, 1047567 - 1046904
Alignment:
| Q |
20 |
ccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatc |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| || |||||||||| |
|
|
| T |
1047567 |
ccaagcatttatttttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatc |
1047468 |
T |
|
| Q |
120 |
attcaccccacatctccaatcttcttcacctttgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgatttaggctcaaacccatct |
219 |
Q |
| |
|
|||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1047467 |
attcacaccacaattccatgtttcttcgcctttgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggtgatttaggctcaaacccatct |
1047368 |
T |
|
| Q |
220 |
aaacattggcaaattggagactcgttatgaacgcaatttccataagggccacaacgattatagacatcacaatcatcttttggcactgactcaataacac |
319 |
Q |
| |
|
|||||||| |||||||||||| ||||| || |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
1047367 |
aaacattgacaaattggagacgggttataaatgcaatttccatatgggccacaatgattatagacatcacaatcatcttttggtactgactcaataccac |
1047268 |
T |
|
| Q |
320 |
tccaagtatcgtcttctggaatccaattaacacgttctcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
419 |
Q |
| |
|
||||||||| ||| |||||| |||| ||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1047267 |
tccaagtattgtcctctggactccatataatgcgttcgtgaagactaagcgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
1047168 |
T |
|
| Q |
420 |
tatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactccattccaa |
519 |
Q |
| |
|
| ||||||||| ||||||||||||||||| || ||| || |||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1047167 |
tgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgtaacaatctccataggcgctccactaaatccaactccattccaa |
1047068 |
T |
|
| Q |
520 |
gggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaatctcccgaagatggatcgt |
619 |
Q |
| |
|
|| ||| | |||||||| |||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1047067 |
ggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattactacgaaggacaataccccaagttaaatctcccgaagatggatcgt |
1046968 |
T |
|
| Q |
620 |
cccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
683 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1046967 |
cccaatttttccaagaagttaatggacgattaagaccaatttttaggtcccatccaagcttcat |
1046904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 683
Target Start/End: Complemental strand, 1072380 - 1071717
Alignment:
| Q |
20 |
ccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| || ||||| ||| |
|
|
| T |
1072380 |
ccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttctaaaacgatc |
1072281 |
T |
|
| Q |
120 |
attcaccccacatctccaatcttcttcacctttgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgatttaggctcaaacccatct |
219 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
1072280 |
attcacaccacaattccatgtttcttcacctttgcgcacacatccttgtgtccaatttgatgcgtaccaattttgtggtgatttaggctcaaacccatct |
1072181 |
T |
|
| Q |
220 |
aaacattggcaaattggagactcgttatgaacgcaatttccataagggccacaacgattatagacatcacaatcatcttttggcactgactcaataacac |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||| | | |
|
|
| T |
1072180 |
aaacattggcaaattggagacgggttatgaatgcaatttccataagggccgcaacgattatagacatcacaatcattttttggtactgactgaatatcgc |
1072081 |
T |
|
| Q |
320 |
tccaagtatcgtcttctggaatccaattaacacgttctcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
419 |
Q |
| |
|
||||||| | ||| |||||| |||| |||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1072080 |
tccaagtgttgtcctctggactccatataacgcgttcatgaagactaagcgtttggttcaaataagttattgaaaccatactcttgtttacaagactata |
1071981 |
T |
|
| Q |
420 |
tatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactccattccaa |
519 |
Q |
| |
|
| || |||||||||||||||||||| |||| | |||||| || |||| |||| |||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1071980 |
tgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacacttgacgtaataatctccataggtgctccactaaatccaactccattccaa |
1071881 |
T |
|
| Q |
520 |
gggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaatctcccgaagatggatcgt |
619 |
Q |
| |
|
|| ||| | || ||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
1071880 |
ggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattactatgaaggacaataccccatgttaaatctcccgatgatggatcgt |
1071781 |
T |
|
| Q |
620 |
cccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
683 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1071780 |
cccaatttttccaagaagttaattgacgattaagaccggtttttaagtcccatccatgcttcat |
1071717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 683
Target Start/End: Complemental strand, 1104594 - 1103934
Alignment:
| Q |
20 |
ccaagcatttattcttacaattctcaagtgtcatattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatc |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||| || ||||||||||| | | ||||| || |||||||||| |
|
|
| T |
1104594 |
ccaagcatttgttcttacaattctcaagtgtcatattaccatcaacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatc |
1104495 |
T |
|
| Q |
120 |
attcaccccacatctccaatcttcttcacctttgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgatttaggctcaaacccatct |
219 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
1104494 |
attcacaccacaattccatgtttcttcgccttttcgcacacatccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttct |
1104395 |
T |
|
| Q |
220 |
aaacattggcaaattggagactcgttatgaacgcaatttccataagggccacaacgattatagacatcacaatcatcttttggcactgactcaataacac |
319 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| || ||||||||||| |||||| |||||||| |||||||||||||| |||| ||| |||| ||| | |
|
|
| T |
1104394 |
aaacattgacaaattggagactcattaggaatacattttccataaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccc |
1104295 |
T |
|
| Q |
320 |
tccaagtatcgtcttctggaatccaattaacacgttctcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
419 |
Q |
| |
|
||||| || |||||||||||||| ||| |||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1104294 |
tccaatcattatcttctggaatccatgtaatgcgttgacgcttctcaagtgtttggttcaaataagttattgaaacattactcttgtttacaagactata |
1104195 |
T |
|
| Q |
420 |
tatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactccattccaa |
519 |
Q |
| |
|
| |||| ||||||||||||| ||||||||| | |||| | | |||||| ||||||| || || | |||||||||||||||||||||||||||||| |
|
|
| T |
1104194 |
tgtgtagtaaacttcatttgtattgttcacaaattttgt---ttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaa |
1104098 |
T |
|
| Q |
520 |
gggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaatctcccgaagatggatcgt |
619 |
Q |
| |
|
|| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||| ||||| | |
|
|
| T |
1104097 |
ggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcat |
1103998 |
T |
|
| Q |
620 |
cccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
683 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1103997 |
cccaatttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagcttcat |
1103934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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