View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_high_20 (Length: 495)
Name: NF1299_2D_high_20
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 43173761 - 43173288
Alignment:
| Q |
1 |
caaccttctggttacacacatcaggacctgaatttataagatcataaacatgattccaaaagagaggtggagttaaacccctagaccaaccttcttcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43173761 |
caaccttctggttacacacatcaggacctgaatttataagatcataaacatgattccaaaagagaggtggagttaaacccctagaccaactttcttcatc |
43173662 |
T |
|
| Q |
101 |
gtctcctgcacctggtatataattccagctaaactcggagttagtcttgttgtgttggcttacaccattcgacgaagaagaagcagagacaagtatgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173661 |
gtctcctgcacctggtatataattccagctaaactcggagttagtcttgttgtgttggcttacaccattcgacgaagaagaagcagagacaagtatgatt |
43173562 |
T |
|
| Q |
201 |
ggagtgaaatcccatgaatcatggtgaggtacttcatttaaccatatgacagttttctgagaaatccatagaggacgtaatggtttcttcaaggaagcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173561 |
ggagtgaaatcccatgaatcatggtgaggtacttcatttaaccatatgacagttttctgagaaatccatagaggacgtaatggtttcttcaaggaagcag |
43173462 |
T |
|
| Q |
301 |
agagagaagcaatgtcagccccacttgctttcaattgttctgtccattcctctaagtgctcctcaattgaagccttttctgttaggggaacccaaagtgg |
400 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43173461 |
agagggaagcaatgtcagccccacttgctttcaattgttctgtccattcctctaagtgctcctcaattgaagccttttctgttaggggaacccaaagtgg |
43173362 |
T |
|
| Q |
401 |
taggtgcaaagagcaatcccaatcagagtcctcctgttttatgaaaggcaacggcacaattattataaagggtt |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43173361 |
taggtgcaaagagcaatcccaatcagagtcctcctgttttatgaaaggtaacggcacaattattataaagggtt |
43173288 |
T |
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