View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_high_27 (Length: 426)

Name: NF1299_2D_high_27
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_high_27
NF1299_2D_high_27
[»] chr1 (1 HSPs)
chr1 (1-426)||(5957915-5958338)
[»] chr7 (1 HSPs)
chr7 (261-413)||(38154005-38154158)
[»] chr8 (3 HSPs)
chr8 (261-413)||(37929207-37929360)
chr8 (264-391)||(31686277-31686405)
chr8 (261-317)||(1590571-1590627)
[»] chr2 (2 HSPs)
chr2 (292-404)||(33645711-33645826)
chr2 (261-309)||(34443879-34443927)
[»] chr5 (1 HSPs)
chr5 (261-318)||(11721789-11721846)
[»] chr4 (1 HSPs)
chr4 (261-317)||(40435345-40435401)
[»] chr6 (2 HSPs)
chr6 (268-371)||(11324610-11324713)
chr6 (268-317)||(13390117-13390166)
[»] chr3 (1 HSPs)
chr3 (266-317)||(35583604-35583655)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 5957915 - 5958338
Alignment:
Q  1 cttgcaacaaggaaaatttggccacatgtatatgaacatcttcaattttttcacatagnnnnnnngcaggaatagtcagtaaattgcagcaatgtactag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  5957915 cttgcaacaaggaaaatttggccacatgtatatgaacatcttcaattttttcacatagtttttttgcaggaatagtcagtaaattgcagcaatgtactag 5958014  T
Q  101 tcggtttcagttgtaatgttgcactaattccaagtagttggattaatttgtcgtagttaatgtttaggtagcattttatcctatgtgtacttgttgtatg 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    || |||    
T  5958015 tcagtttcagttgtaatgttgcactaattccaagtagttggattaatttgtcgtagttagtgtttaggtagcattttatcctatgtgtac---gtgcatg 5958111  T
Q  201 agtatatttgttatatgttcttgatgtgtgatatgtgtctggaagatgatgannnnnnnnaagaggctaaaattgaatatattatcaactcaaaaag-tt 299  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||        |||||| |||||||||||||||||||||||||||||| ||    
T  5958112 agtatatttgttatatgttcttgatgtgtgatatgtgtttggaagatgatgattttttttaagaggttaaaattgaatatattatcaactcaaaaagttt 5958211  T
Q  300 ttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagaggaaactgtacaaaaaccataaaaaagaaataattatcagc 399  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5958212 ttttttagcataaggtgtatataggaaagacaaacaaagtcgaaacagtatttacaagagaaaactgtacaaaaatcataaaaaagaaataattatcagc 5958311  T
Q  400 ctatgcctaacaagataaatgaattaa 426  Q
    |||||||||||||| ||||||||||||    
T  5958312 ctatgcctaacaaggtaaatgaattaa 5958338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 38154158 - 38154005
Alignment:
Q  261 aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagagg 360  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  38154158 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaggacaaacaacgtcgaaacaatatttacaagagg 38154059  T
Q  361 aaactgtacaaaaac-cataaaaaagaaataattatcagcctatgcctaacaag 413  Q
    |||||||||||||||  | ||||||||||||| ||||| |||||||||||||||    
T  38154058 aaactgtacaaaaacaaacaaaaaagaaataactatcaacctatgcctaacaag 38154005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 37929360 - 37929207
Alignment:
Q  261 aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagagg 360  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  37929360 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaacaatgtcaaaacaatatttacaagagg 37929261  T
Q  361 aaactgtacaaaaacca-taaaaaagaaataattatcagcctatgcctaacaag 413  Q
    |||||||||| ||   |  ||||||||||||| |||||||||||||||||||||    
T  37929260 aaactgtacataacgaagcaaaaaagaaataactatcagcctatgcctaacaag 37929207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 391
Target Start/End: Original strand, 31686277 - 31686405
Alignment:
Q  264 aggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagaggaaa 363  Q
    |||||||||| ||||||||||  | || ||||||| ||| |||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  31686277 aggctaaaatggaatatattaatatcttaaaaagtctttcctagcacaaggtgtacataggaaagacaaataacgtcgaaacaatatttacaagaggaaa 31686376  T
Q  364 ctgtacaaaaaccat-aaaaaagaaataa 391  Q
    |||||||||||| || |||||||||||||    
T  31686377 ctgtacaaaaacaatcaaaaaagaaataa 31686405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 1590627 - 1590571
Alignment:
Q  261 aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt 317  Q
    |||| |||||||| ||||||||||||||| ||||| || ||| ||||||||||||||    
T  1590627 aagaagctaaaatggaatatattatcaacacaaaatgtctttcctagcataaggtgt 1590571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 33645711 - 33645826
Alignment:
Q  292 aaaaagttttttctagcataaggtgtatataggaaagacaaacaaagtcgaaacaatatttacaagagg--aaactgtacaa-aaaccataaaaaagaaa 388  Q
    ||||||| ||||||| ||||||||||| |||||| | | |||||| |||||||||||||||||||||||  ||||||||||| || | | ||||||||||    
T  33645711 aaaaagtcttttctaacataaggtgtacataggacatataaacaatgtcgaaacaatatttacaagaggaaaaactgtacaagaagcaacaaaaaagaaa 33645810  T
Q  389 taattatcagcctatg 404  Q
    ||| ||||||||||||    
T  33645811 taactatcagcctatg 33645826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 34443927 - 34443879
Alignment:
Q  261 aagaggctaaaattgaatatattatcaactcaaaaagttttttctagca 309  Q
    ||||||||||||| |||||||||| ||| |||||| |||||| ||||||    
T  34443927 aagaggctaaaatggaatatattaccaaatcaaaatgtttttcctagca 34443879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 11721846 - 11721789
Alignment:
Q  261 aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgta 318  Q
    ||||||||||||| |||||||||||||| |||||| |||||| |||||| ||||||||    
T  11721846 aagaggctaaaatagaatatattatcaaatcaaaatgtttttcctagcacaaggtgta 11721789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 40435401 - 40435345
Alignment:
Q  261 aagaggctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt 317  Q
    ||||| ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||    
T  40435401 aagagactaaaatggaatatattatcaacacaaaaagttctttctagcacaaggtgt 40435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 11324713 - 11324610
Alignment:
Q  268 taaaattgaatatattatcaactcaaaaagttttttctagcataaggtgtatatagga-aagacaaacaaagtcgaaacaatatttacaagaggaaactg 366  Q
    |||||| ||||||||||  || |||||  || ||| |||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||  |||| |||    
T  11324713 taaaatggaatatattacgaaatcaaagtgtctttcctagcacaagatgtacataggagaagacaa-caaagtcgaaacaatatttacaaagggaatctg 11324615  T
Q  367 tacaa 371  Q
    |||||    
T  11324614 tacaa 11324610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 13390117 - 13390166
Alignment:
Q  268 taaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt 317  Q
    |||||| ||||||||||||||||||||| || ||| |||||| |||||||    
T  13390117 taaaatggaatatattatcaactcaaaatgtctttcctagcacaaggtgt 13390166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 35583655 - 35583604
Alignment:
Q  266 gctaaaattgaatatattatcaactcaaaaagttttttctagcataaggtgt 317  Q
    |||||||| ||||||||||||||| ||||| || |||||||||| |||||||    
T  35583655 gctaaaatggaatatattatcaacacaaaatgtcttttctagcacaaggtgt 35583604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University