View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_high_28 (Length: 384)
Name: NF1299_2D_high_28
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 28 - 366
Target Start/End: Complemental strand, 31206676 - 31206336
Alignment:
| Q |
28 |
tagtttataatttttcttagaattttacctcttttattatacttgaaaaagttaactattagttcaaacatgttgattgataacaaatcatgttaagttc |
127 |
Q |
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| T |
31206676 |
tagtttataatttttcttagaattttacctcttttattttacttgaaaaagttaactattagttcaaacatgttgattgataacaaatcatgttaagttc |
31206577 |
T |
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| Q |
128 |
aagaacacacctcacatcttgcaaaagtaacatatggttggcaaacatcgtaagacatacg----gaacacatatcttgaacattacaaaccgttttatt |
223 |
Q |
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| T |
31206576 |
aagaacacacctcacatcttgcaaaagtaactcatggttggcaaacatcgtaagacatacttactgaacacatatcttgaacattacaaaccgttttgtt |
31206477 |
T |
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| Q |
224 |
tataaggtgaacaactccaccttcatttagccttagagtctcaacttgttgttaaaggagcttccagagtccatgacttaacttttcaccaatagtgcct |
323 |
Q |
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| T |
31206476 |
ttcaaggtgaacaactccaccttcatctagccttagagtctcaacttgttgttaaa-gagcttccagagtccatgacttaacttttcaccactagtgcct |
31206378 |
T |
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| Q |
324 |
ctgcttcctcgtaattttttctgcgaggcaacttgcatgaaat |
366 |
Q |
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| T |
31206377 |
ctgcttcctcgtaa-tttttctgtgaggcaacttgcatgaaat |
31206336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 2239196 - 2239226
Alignment:
| Q |
121 |
taagttcaagaacacacctcacatcttgcaa |
151 |
Q |
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| T |
2239196 |
taagttcaagaacacacctcacatcttgcaa |
2239226 |
T |
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