View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_high_33 (Length: 364)
Name: NF1299_2D_high_33
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 15618708 - 15618364
Alignment:
| Q |
1 |
ttcctccatgccacgagataggtagtggttggacaccctaccattcttcgagttgcgcatcaagaatcgttcctccgtgtcgtgaggtaggcagaaccta |
100 |
Q |
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| T |
15618708 |
ttcctccatgccacgagataggcagtggttggacaccctaccattcttcgagttgcgcgtcaagaatcgttcctccgtgtcgtgaggtaggcagaaccta |
15618609 |
T |
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| Q |
101 |
ggctacaaattaaatggtaagacatatacaaaaagaatagcaaataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcattt |
200 |
Q |
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| T |
15618608 |
ggctcc-----aaatggtaaggcatatac-aaaagaatagctaataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcattt |
15618515 |
T |
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| Q |
201 |
ggctagttatcaccttgaatagaaaaatagagatctcgcttaagggtgcaaatgatgtccttttttaaactttagtttagatgttcattgttcattatct |
300 |
Q |
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| T |
15618514 |
ggctagttgtcaccttgaatagaaaaatagagatctcgcttaagggtgcaaatgatgtccttttttaaactttagtttagatgttcattgttcattatct |
15618415 |
T |
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| Q |
301 |
atgcttttactagattggcatgttatccagttcgcttggtttaacaccaaa |
351 |
Q |
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| T |
15618414 |
atgcttttactagattggcatgttatccagttcgcttggtttaacaccaaa |
15618364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 307
Target Start/End: Complemental strand, 8527807 - 8527643
Alignment:
| Q |
144 |
ataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagttatcaccttgaatagaaaaatagagatctcgcttaa |
243 |
Q |
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| T |
8527807 |
ataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgtgattttgaa-aaaaaactacaaatctcatttta |
8527709 |
T |
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| Q |
244 |
gggtgcaaatgatgtccttttt--taaactttagtttagatgttcattgttcattatctatgcttt |
307 |
Q |
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| T |
8527708 |
agatgcaaatgatgtctttttttgtaaaatttaatctagatgttcattaatcattatctgtgcttt |
8527643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 1601250 - 1601314
Alignment:
| Q |
144 |
ataagaaagaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagtt |
208 |
Q |
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| T |
1601250 |
ataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagtt |
1601314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 1601348 - 1601410
Alignment:
| Q |
243 |
agggtgcaaatgatgtccttttttaaactttagtttagatgttcattgttcattatctatgct |
305 |
Q |
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| T |
1601348 |
aggatgcaaatgatgtctttttgtaaactttaatctagatgttcactaatcattatctatgct |
1601410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 48362895 - 48362951
Alignment:
| Q |
152 |
gaatttacatacactagacagggttatgttaaatcacaagttatcatttggctagtt |
208 |
Q |
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| T |
48362895 |
gaatttccatacactgggcagggttatgttaaatcacaagttatgatttggctagtt |
48362951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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