View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_high_41 (Length: 332)
Name: NF1299_2D_high_41
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 95 - 316
Target Start/End: Complemental strand, 6441932 - 6441711
Alignment:
| Q |
95 |
cagggaaacaaaattcgtgtcattgtgagaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttagtg |
194 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6441932 |
cagggaaacaaaattcgtgtcattataagaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttggtg |
6441833 |
T |
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| Q |
195 |
tgctgcgaatcttgagtcttatcgaacaataaagcatgagtacaatctcaattttcagttcaacacaaaagtaaaatgaatggccaaatgagattatatt |
294 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6441832 |
tgctgcgaatcttgagtcttatcagacaataaagcacgagtacaatctcaattttcagttcaacacaaaagtaaaatgaatggccaaatgagattttata |
6441733 |
T |
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| Q |
295 |
aagaattggcaaaatgttgatt |
316 |
Q |
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|||||||||||||||||||||| |
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| T |
6441732 |
aagaattggcaaaatgttgatt |
6441711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 271
Target Start/End: Original strand, 21582246 - 21582398
Alignment:
| Q |
120 |
tgagaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttagtgt-gctgcgaatcttgagtcttatcg |
218 |
Q |
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| T |
21582246 |
tgagaagaactttgatttacaaatttgagaaggacccgcacgaaggaaaggtctactctatgagtaactttggtgttgctgtgaatcttggatcttatcg |
21582345 |
T |
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| Q |
219 |
aacaataaagcatgagtacaatctcaattttcagttcaacacaaaagtaaaat |
271 |
Q |
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| T |
21582346 |
gaccacaaagcacgaatacaaactcaattttcagtttaacaccaaagtgaaat |
21582398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 48554659 - 48554808
Alignment:
| Q |
123 |
gaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttagtgt-gctgcgaatcttgagtcttatcgaac |
221 |
Q |
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| T |
48554659 |
gaagaactctgatctacaaatttgagaaggacctgcaagagggaaaggtctactctatgagttgctttggtgttgctgcgaatcttggatcttatcgcac |
48554758 |
T |
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| Q |
222 |
aataaagcatgagtacaatctcaattttcagttcaacacaaaagtaaaat |
271 |
Q |
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| T |
48554759 |
cacaaagcacgagtacaaactcaatttccaatttaacaccaaagtgaaat |
48554808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 29966451 - 29966302
Alignment:
| Q |
123 |
gaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttagtgt-gctgcgaatcttgagtcttatcgaac |
221 |
Q |
| |
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| T |
29966451 |
gaagaactctgatctacaaatttgagaaggacctgcaagagggaaaggtctactctatgagtggctttggtgttgctgcgaatcttggatcttatcgcac |
29966352 |
T |
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| Q |
222 |
aataaagcatgagtacaatctcaattttcagttcaacacaaaagtaaaat |
271 |
Q |
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| T |
29966351 |
cacaaagcacgagtacaaactcaatttccaatttaacaccaaagtgaaat |
29966302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 15887103 - 15886976
Alignment:
| Q |
122 |
agaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttagtg-tgctgcgaatcttgagtcttatcgaa |
220 |
Q |
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||||||||| |||| |||||||| || | ||| |||| |||||||| || ||||||||||| ||||| ||| |||||| ||||||| |||||||| | |
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| T |
15887103 |
agaagaactctgatctacaaatttgagaaggacctgcaggagggaaaggtctactctatgagtggctttggtgttgctgctaatcttggatcttatcgca |
15887004 |
T |
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| Q |
221 |
caataaagcatgagtacaatctcaattt |
248 |
Q |
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| T |
15887003 |
ccacaaagcacgagtacaaactcaattt |
15886976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 26248431 - 26248282
Alignment:
| Q |
123 |
gaagaactttgatttacaaattcgaaacagacttgcatgagggaaatgttaactctatgagtagctttagtgt-gctgcgaatcttgagtcttatcgaac |
221 |
Q |
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|||||||| |||| |||||||| || | ||| |||| |||||||| || ||||||||||| ||||| |||| ||||||||||||| |||||||| || |
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| T |
26248431 |
gaagaactctgatctacaaatttgagaaggacctgcaggagggaaaggtctactctatgagtggctttggtgttgctgcgaatcttggatcttatcgcac |
26248332 |
T |
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| Q |
222 |
aataaagcatgagtacaatctcaattttcagttcaacacaaaagtaaaat |
271 |
Q |
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| T |
26248331 |
cacaaagcacgaatacaaactcaatttccaatttaacaccaaagtgaaat |
26248282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 32024823 - 32024868
Alignment:
| Q |
112 |
tgtcattgtgagaagaactttgatttacaaattcgaaacagacttg |
157 |
Q |
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||||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
32024823 |
tgtcactgtgagaagaattttgatttacaaattcgaaaaagacttg |
32024868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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