View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_high_42 (Length: 324)
Name: NF1299_2D_high_42
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1583475 - 1583185
Alignment:
| Q |
3 |
atcatcaacatcattagctctcaacctcatgttttcatcatgttagtcacgttgtcgtatttaaatcgtagcttcagcttcactcctttaaaacttgtat |
102 |
Q |
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| T |
1583475 |
atcatcatcatcattggctctcaacctcatgttttcatcatgttagccacgttgtcgtatttaaaacgtagcttcagcttcactcctttaaaacttgtat |
1583376 |
T |
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| Q |
103 |
catgtggactaattgagaactaacaattatgtgtagctaaatcccctaaataaattaggtgtagctaaatcatttggtcgtggcagtagttgctattgag |
202 |
Q |
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| T |
1583375 |
catatggactaattgagaactaacaattatgtgtagctaaatcccctaaataaattaggtgtagctaaatcatttggtcgtggcagtagttgctattgag |
1583276 |
T |
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| Q |
203 |
cttgagtaat---catcgtgttggataggcaagttaggaacatataaaatcataccttgcattacccccacagaacttgaatgaagataaa |
290 |
Q |
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| T |
1583275 |
cttgagtaatcatcatcgtgttggataggcaagttaggaacatataaaatcataccttgtattacccccacataacttgaatgaagataaa |
1583185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 1581098 - 1581046
Alignment:
| Q |
162 |
tgtagctaaatcatttggtcgtggcagtagttgctattgagcttgagtaatcat |
215 |
Q |
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| T |
1581098 |
tgtagctaaataattttgtcgtggcagtagttg-tattgagcttgagtaatcat |
1581046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 1574133 - 1574071
Alignment:
| Q |
80 |
cttcactcctttaaaacttgtatcatgtggactaattgagaactaacaattatgtgtagctaaat |
144 |
Q |
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| T |
1574133 |
cttcacgcctttaaaactagta--atatagactaattgagaacaaacaattatgtgtagctaaat |
1574071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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