View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1299_2D_high_47 (Length: 295)
Name: NF1299_2D_high_47
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 80 - 285
Target Start/End: Complemental strand, 48891956 - 48891751
Alignment:
| Q |
80 |
attaactgagaaatgtttgaagtttaattagcttttcacgttatcacttaattatcatccagtctccctgttcattcatcattagatatacaacaatttc |
179 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48891956 |
attaactcagaaatgtttgaagtttaattagcttttcactttatcacttaattaccatccagtctccctgttcattcatcattagatatacaacaatttc |
48891857 |
T |
|
| Q |
180 |
taccnnnnnnnnnnnnnngaagatacgcacacaacaataaacggaaattttctacaattaaaattttttaggaaaataattatactacctctgtgggaac |
279 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
48891856 |
tacccaaaaaaaaaacaagaagatacgtacacaacaataaacggaaattttctacaattaaattttttttggaaaataataatactacctccgtgggaac |
48891757 |
T |
|
| Q |
280 |
tccaaa |
285 |
Q |
| |
|
|||||| |
|
|
| T |
48891756 |
tccaaa |
48891751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University