View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_high_58 (Length: 259)

Name: NF1299_2D_high_58
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_high_58
NF1299_2D_high_58
[»] chr3 (19 HSPs)
chr3 (5-73)||(383674-383742)
chr3 (1-70)||(44647840-44647909)
chr3 (1-70)||(50363091-50363160)
chr3 (1-72)||(54425927-54425998)
chr3 (8-70)||(20945273-20945335)
chr3 (1-70)||(35055850-35055919)
chr3 (8-72)||(22659651-22659715)
chr3 (1-68)||(28243823-28243890)
chr3 (8-70)||(13084331-13084393)
chr3 (1-63)||(39931945-39932007)
chr3 (8-70)||(41308749-41308811)
chr3 (1-71)||(51263146-51263216)
chr3 (1-70)||(831333-831402)
chr3 (1-66)||(2421148-2421213)
chr3 (1-70)||(12077716-12077785)
chr3 (1-70)||(26517188-26517257)
chr3 (5-70)||(31474492-31474557)
chr3 (5-70)||(54555897-54555962)
chr3 (22-70)||(31531101-31531149)
[»] chr4 (22 HSPs)
chr4 (8-70)||(16070503-16070565)
chr4 (1-72)||(5168044-5168115)
chr4 (1-70)||(52226084-52226153)
chr4 (1-71)||(29584959-29585029)
chr4 (1-70)||(22750813-22750882)
chr4 (1-70)||(25477290-25477359)
chr4 (5-74)||(37625092-37625161)
chr4 (1-70)||(39197005-39197074)
chr4 (1-70)||(43509146-43509215)
chr4 (1-70)||(43800873-43800942)
chr4 (1-72)||(13096511-13096582)
chr4 (1-72)||(20262363-20262434)
chr4 (1-72)||(20293812-20293883)
chr4 (3-70)||(21121034-21121101)
chr4 (5-70)||(20291409-20291474)
chr4 (1-70)||(38136420-38136489)
chr4 (1-70)||(40411314-40411383)
chr4 (1-70)||(41459652-41459721)
chr4 (1-70)||(56217024-56217093)
chr4 (8-72)||(20185625-20185689)
chr4 (8-72)||(20540043-20540106)
chr4 (1-72)||(52676085-52676157)
[»] chr5 (14 HSPs)
chr5 (1-70)||(5845241-5845310)
chr5 (1-70)||(4857464-4857533)
chr5 (1-70)||(25017644-25017713)
chr5 (1-67)||(16088-16154)
chr5 (1-70)||(600830-600899)
chr5 (1-70)||(8717929-8717998)
chr5 (8-73)||(10934078-10934143)
chr5 (1-70)||(20946152-20946221)
chr5 (10-70)||(11980790-11980850)
chr5 (2-70)||(29866255-29866323)
chr5 (1-74)||(27587903-27587976)
chr5 (3-72)||(36750744-36750813)
chr5 (1-70)||(40979182-40979251)
chr5 (14-70)||(1558084-1558140)
[»] chr7 (16 HSPs)
chr7 (8-70)||(26200939-26201001)
chr7 (1-70)||(1324773-1324842)
chr7 (1-70)||(33181360-33181429)
chr7 (1-70)||(37048100-37048169)
chr7 (1-71)||(21388307-21388377)
chr7 (1-70)||(21809618-21809687)
chr7 (1-56)||(6376118-6376173)
chr7 (8-70)||(4089471-4089533)
chr7 (1-70)||(27162874-27162944)
chr7 (8-70)||(28038859-28038921)
chr7 (1-71)||(42983584-42983654)
chr7 (1-67)||(43601139-43601205)
chr7 (1-70)||(13907714-13907783)
chr7 (1-70)||(40263776-40263845)
chr7 (2-70)||(10408539-10408607)
chr7 (22-70)||(39102750-39102798)
[»] chr8 (18 HSPs)
chr8 (1-70)||(36309568-36309637)
chr8 (13-70)||(7727321-7727378)
chr8 (1-70)||(30262510-30262579)
chr8 (1-70)||(38761330-38761399)
chr8 (1-72)||(45185237-45185308)
chr8 (1-70)||(2562701-2562771)
chr8 (1-70)||(12762907-12762976)
chr8 (1-70)||(23399749-23399818)
chr8 (1-70)||(24276529-24276598)
chr8 (1-70)||(25888660-25888729)
chr8 (1-70)||(31746377-31746446)
chr8 (7-72)||(33385317-33385382)
chr8 (1-66)||(36437566-36437631)
chr8 (1-70)||(40517805-40517874)
chr8 (1-70)||(43191449-43191518)
chr8 (8-72)||(41087046-41087110)
chr8 (1-61)||(45183842-45183902)
chr8 (2-70)||(45203824-45203892)
[»] chr2 (14 HSPs)
chr2 (1-70)||(2917072-2917141)
chr2 (1-74)||(11459218-11459291)
chr2 (1-71)||(17250931-17251001)
chr2 (1-70)||(2654366-2654435)
chr2 (1-70)||(23464748-23464817)
chr2 (1-70)||(41665775-41665844)
chr2 (1-68)||(34330067-34330134)
chr2 (5-71)||(40533128-40533194)
chr2 (8-70)||(45214797-45214859)
chr2 (1-70)||(375316-375385)
chr2 (1-70)||(28190663-28190732)
chr2 (1-70)||(42250850-42250919)
chr2 (1-70)||(44424660-44424729)
chr2 (18-70)||(13534487-13534539)
[»] chr1 (20 HSPs)
chr1 (1-70)||(291605-291674)
chr1 (1-74)||(4817872-4817945)
chr1 (1-74)||(4829672-4829745)
chr1 (8-72)||(34012558-34012622)
chr1 (1-72)||(51390505-51390576)
chr1 (22-71)||(1596220-1596269)
chr1 (1-70)||(23982562-23982631)
chr1 (1-70)||(32152222-32152291)
chr1 (1-72)||(47643604-47643675)
chr1 (8-74)||(51997026-51997093)
chr1 (20-70)||(34028471-34028521)
chr1 (1-71)||(35365953-35366023)
chr1 (8-70)||(40612929-40612991)
chr1 (8-70)||(44652831-44652893)
chr1 (1-70)||(3143467-3143536)
chr1 (1-70)||(8984631-8984700)
chr1 (1-70)||(20564839-20564908)
chr1 (1-70)||(32144375-32144444)
chr1 (1-70)||(47070931-47071000)
chr1 (1-70)||(48721838-48721907)
[»] scaffold0116 (1 HSPs)
scaffold0116 (8-68)||(5866-5926)
[»] chr6 (11 HSPs)
chr6 (1-72)||(1763878-1763949)
chr6 (1-70)||(197423-197492)
chr6 (1-70)||(3729487-3729556)
chr6 (1-70)||(31945884-31945953)
chr6 (1-70)||(16327188-16327258)
chr6 (1-70)||(16350586-16350656)
chr6 (8-70)||(31536084-31536146)
chr6 (1-70)||(15981859-15981928)
chr6 (5-70)||(31039215-31039280)
chr6 (18-70)||(30248944-30248996)
chr6 (8-72)||(30465938-30466002)
[»] scaffold0699 (1 HSPs)
scaffold0699 (1-67)||(7642-7708)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-70)||(99788-99857)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 383674 - 383742
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaaga 73  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  383674 tcatttgtttatatgtgtatttaatttaacttttcacattctaatacaagttagtagtattaattaaga 383742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44647840 - 44647909
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||||||| |||||||||||| |||||||| ||| |||||||||||  ||||||||||||    
T  44647840 attgtcatttgtttatatgtgtatttaatttgacttttcatattgtaatacaagttgatagtattaatta 44647909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50363091 - 50363160
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  50363091 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 50363160  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 54425998 - 54425927
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||||||||||||||| |||||| ||||||| |||||| ||| |||  |  |||||||||||||||||||    
T  54425998 attgtcatttgtttatatgtgtattaaatttaatttttcatattttaagtctggttagtagtattaattaag 54425927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 20945335 - 20945273
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| ||| |||||| ||||| |||||||| ||| ||| |||||||||||||||||||||    
T  20945335 tttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttagtagtattaatta 20945273  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35055850 - 35055919
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||||||| || ||| |||||| ||||| |||||| | |||  ||||||||||||||||||||||||    
T  35055850 attgtcatttgcttgtatgtgtattaaatttgactttttatatttcaatacaagttagtagtattaatta 35055919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 22659651 - 22659715
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||||| ||| |||||| |||||||||||||| |||  || |||| ||||||||||||||||||    
T  22659651 tttgtttgtatgtgtattaaatttaacttttcatatttcaaaacaaattagtagtattaattaag 22659715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28243823 - 28243890
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaat 68  Q
    |||||| ||||||||| | |||||| |||||||||||| | |||  |||| |||||||||||||||||    
T  28243823 attgtcctttgtttatgtgtgtattaaatttaactttttatatttcaatataagttagtagtattaat 28243890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 13084393 - 13084331
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| ||| |||||| ||||| |||||||| ||| ||| |||||||||||| ||||||||    
T  13084393 tttgtttgtatgtgtattaaatttgacttttcaaattttaacacaagttagtagcattaatta 13084331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39931945 - 39932007
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagta 63  Q
    |||||||||||||| ||| |||||| ||||| | |||||| ||| ||| ||||||||||||||    
T  39931945 attgtcatttgtttgtatgtgtattaaattttagttttcatattttaagacaagttagtagta 39932007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 41308811 - 41308749
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||||||| |||||| |||||  ||||||| |||  || |||||||||||||||||||||    
T  41308811 tttgtttatatgtgtattaaatttggcttttcatatttcaagacaagttagtagtattaatta 41308749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 51263146 - 51263216
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || | ||||||||||||||||||||    
T  51263146 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttaaagataagttagtagtattaattaa 51263216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 831402 - 831333
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||||||| |||||| ||||| | |||||| |||  |||| |||||| ||||||||||||    
T  831402 attgtcctttgtttatatgtgtattaaatttgatttttcatatttcaatataagttattagtattaatta 831333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2421148 - 2421213
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtatta 66  Q
    |||||||||||||| ||| | |||| ||||| |||||| | |||| || |||||||||||||||||    
T  2421148 attgtcatttgtttgtatgtatattaaatttgactttttatattcaaagacaagttagtagtatta 2421213  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12077785 - 12077716
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || ||||| ||| |||||||||||    
T  12077785 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagatagaagtattaatta 12077716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26517257 - 26517188
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||| ||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  26517257 attgtcctttatttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 26517188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 31474492 - 31474557
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||| ||| |||||| ||||||  |||||| ||| ||| |||| ||||||||||||||||    
T  31474492 tcatttgtttgtatgtgtattaaatttagtttttcaaattttaagacaaattagtagtattaatta 31474557  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 54555962 - 54555897
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| | |||| | |||||||||||| | | ||| |||| ||||||||||||||||    
T  54555962 tcatttgtttatatgtatattaattttaacttttcatactttaagacaaattagtagtattaatta 54555897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 31531149 - 31531101
Alignment:
Q  22 tatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||| |||||||||||||| |||  || |||||||||||||||||||||    
T  31531149 tattaaatttaacttttcaaatttcaagacaagttagtagtattaatta 31531101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 16070503 - 16070565
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||||||| ||||| |||||||| |||  ||||||||||||||||||||||||    
T  16070503 tttgtttatatatgtattaaatttgacttttcatatttcaatacaagttagtagtattaatta 16070565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5168044 - 5168115
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||||||||||| ||| |||||| ||||||| |||||| |||  |||||||| |||||||||||||||||    
T  5168044 attgtcatttgtttgtatgtgtattaaatttaatttttcatatttcaatacaagctagtagtattaattaag 5168115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52226084 - 52226153
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||||||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  52226084 attgtcctttgtttatatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 52226153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29584959 - 29585029
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||||||||||| ||| |||||| ||||| |||||| | ||| ||| |||||||| |||||||||||||    
T  29584959 attgtcatttgtttgtatgtgtattaaatttgactttttatattttaagacaagttaatagtattaattaa 29585029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22750882 - 22750813
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || |||| ||||||||||||||||    
T  22750882 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaacttagtagtattaatta 22750813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25477290 - 25477359
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  25477290 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaatta 25477359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 37625161 - 37625092
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaagag 74  Q
    |||||||||||||| |||||| ||||| |||||||| |||  || |  ||||||||||||||||||||||    
T  37625161 tcatttgtttatatgtgtattaaatttgacttttcatatttcaagattagttagtagtattaattaagag 37625092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39197074 - 39197005
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| ||| ||| ||||||||||| |||||||||    
T  39197074 attgtcttttgtttgtatgtgtattaaatttgacttttcaaattttaaaacaagttagtattattaatta 39197005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43509146 - 43509215
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| |||||||||||||| |||  || |||| ||||||||||||||||    
T  43509146 attgtcttttgtttgtatgtgtattaaatttaacttttcaaatttcaagacaaattagtagtattaatta 43509215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43800873 - 43800942
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||||||||| |||||||| |||  || ||||||| |||||||||||||    
T  43800873 attgtcctttgtttgtatgtgtatttaatttgacttttcatatttcaagacaagttggtagtattaatta 43800942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13096582 - 13096511
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||||||||||| ||| || ||  || ||||||||||| ||| ||| |||||||| ||||||||||||||    
T  13096582 attgtcatttgtttctatgtgcataaaaattaacttttcatattttaagacaagttactagtattaattaag 13096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 20262434 - 20262363
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||| |||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||||    
T  20262434 attgttatttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagatagtagtattaattaag 20262363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20293812 - 20293883
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||| ||||||| ||| |||||| ||||| ||| |||| |||  ||||||||||||||||||||| ||||    
T  20293812 attgtcttttgtttgtatttgtattaaatttgactattcatatttcaatacaagttagtagtattaagtaag 20293883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 21121034 - 21121101
Alignment:
Q  3 tgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||| ||||||| |||  ||||| |||||||||||| | ||| ||| |||||||||||||||||||||    
T  21121034 tgtcttttgtttgtatgcgtattaaatttaactttttatattttaagacaagttagtagtattaatta 21121101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 20291409 - 20291474
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||| ||| |||||| ||||| |||||||| |||  || | |||||||||||||||||||    
T  20291409 tcatttgtttgtatgtgtattaaatttgacttttcatatttcaagataagttagtagtattaatta 20291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38136420 - 38136489
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||| ||||||| | |||||| |||  ||  ||||||||||||||||||||    
T  38136420 attgtcatttgtttgtatgtgtaattaatttgatttttcatatttcaaggcaagttagtagtattaatta 38136489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40411383 - 40411314
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| |||||||||||||| |||  || ||||| || || |||||||||    
T  40411383 attgtcatttgtttgtatgtgtattaaatttaacttttcatatttcaagacaagataataatattaatta 40411314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41459652 - 41459721
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||| ||||||| |||||| ||||| |||||||| |||  |  |||||||||||||||||||||    
T  41459652 attgtcttttatttatatgtgtattaaatttgacttttcatatttcatgacaagttagtagtattaatta 41459721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 56217093 - 56217024
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| |||||||||||||| |||  || | ||| |||||||||||||||    
T  56217093 attgtcctttgtttgtatttgtattaaatttaacttttcatatttcaagataagatagtagtattaatta 56217024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 20185689 - 20185625
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||||| ||| |||||| ||||| |||||||| |||  || |||| ||||||||||||||||||    
T  20185689 tttgtttgtatttgtattaaatttgacttttcatatttcaagacaaattagtagtattaattaag 20185625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 20540043 - 20540106
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||||| ||| |||||| ||||| ||||| || ||| |||||||||||| ||||||||||||||    
T  20540043 tttgtttgtatgtgtattaaatttgacttt-catattttaatacaagttactagtattaattaag 20540106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 52676085 - 52676157
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacatt-ctaatacaagttagtagtattaattaag 72  Q
    |||||| ||| ||||||| |||||| ||||| |||||||| ||| | || |||||||| ||||||||||||||    
T  52676085 attgtcctttatttatatgtgtattaaatttgacttttcaaatttcaaagacaagttaatagtattaattaag 52676157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5845241 - 5845310
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  ||||||||||||||||||||||||    
T  5845241 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaatacaagttagtagtattaatta 5845310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4857533 - 4857464
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| ||| ||| | |||||||||||||||||||    
T  4857533 attgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagataagttagtagtattaatta 4857464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25017713 - 25017644
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| ||| ||| |||||||| ||||||||||||    
T  25017713 attgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttaatagtattaatta 25017644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16154 - 16088
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaa 67  Q
    |||||| ||||||| ||| |||||| ||||| ||||||||||||  || ||||||||||||||||||    
T  16154 attgtcctttgtttgtatttgtattaaatttgacttttcacatttcaagacaagttagtagtattaa 16088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 600830 - 600899
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| |||||||||| ||||| | |||| | ||| ||| ||||||||||| |||||||||    
T  600830 attgtcatttgtttgtatatgtattaaatttgattttttatattttaagacaagttagtaatattaatta 600899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8717998 - 8717929
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| |||||||||| ||||| |||||||| |||  || ||||||| ||| |||||||||    
T  8717998 attgtcatttgtttgtatatgtattaaatttgacttttcatatttcaagacaagttcgtattattaatta 8717929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 10934078 - 10934143
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaaga 73  Q
    ||||||| ||| |||||| ||||| |||||||| |||  |||||||||||||| ||||||||||||    
T  10934078 tttgtttgtatgtgtattaaatttgacttttcatatttcaatacaagttagtaatattaattaaga 10934143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20946152 - 20946221
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||| ||||||    
T  20946152 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagttagtagtactaatta 20946221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 11980790 - 11980850
Alignment:
Q  10 tgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||||| |||||| ||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  11980790 tgtttatatgtgtattaaatttgacttttcatattttaagacatgttagtagtattaatta 11980850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 29866255 - 29866323
Alignment:
Q  2 ttgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||| ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  29866255 ttgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 29866323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27587903 - 27587976
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaagag 74  Q
    |||||| ||||| | ||| |||||| ||||| | |||||| |||  |||||||||||||||||||| |||||||    
T  27587903 attgtcctttgtatgtatgtgtattaaatttgatttttcaaatttcaatacaagttagtagtattatttaagag 27587976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 36750813 - 36750744
Alignment:
Q  3 tgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||| ||||||||||| |||||| ||||| |||||| | |||  || ||||||||| |||||||||||||    
T  36750813 tgtcctttgtttatatgtgtattaaatttgactttttatatttcaaaacaagttagcagtattaattaag 36750744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40979251 - 40979182
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  40979251 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttaaagacaagatagtagtattaatta 40979182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1558084 - 1558140
Alignment:
Q  14 tatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||| |||||||||||||| ||| ||| | |||||| || |||||||||    
T  1558084 tatatatgtattaaatttaacttttcatattttaaaataagttaataatattaatta 1558140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 26201001 - 26200939
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| ||| |||||| |||||||||||||| ||| ||| |||||||||||||||||||||    
T  26201001 tttgtttgtatgtgtattaaatttaacttttcatattttaaaacaagttagtagtattaatta 26200939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1324773 - 1324842
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  1324773 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 1324842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33181360 - 33181429
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| |||||||||||||| | | ||| ||||||||||| |||||||||    
T  33181360 attgtcatttgtttgtatgtgtattaaatttaacttttcatactttaagacaagttagtaatattaatta 33181429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37048100 - 37048169
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||||||| |||| |||  ||||||||||||||||||||||||    
T  37048100 attgtcctttgtttgtatgtgtattaaatttaactattcatatttcaatacaagttagtagtattaatta 37048169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21388307 - 21388377
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| ||| ||| | ||||||||||||||||||||    
T  21388307 attgtcctttgtttgtatgtgtattaaatttgacttttcaaattttaagataagttagtagtattaattaa 21388377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21809687 - 21809618
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  21809687 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagttagtagtattaatta 21809618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6376173 - 6376118
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagtt 56  Q
    |||||||||||||| ||| |||||| |||||||||||||| ||| ||| |||||||    
T  6376173 attgtcatttgtttgtatgtgtattaaatttaacttttcaaattttaagacaagtt 6376118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 4089533 - 4089471
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| |||||||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  4089533 tttgtttgtatatgtattaaatttgacttttcatatttcaagacaagatagtagtattaatta 4089471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27162944 - 27162874
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaac-ttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| |||||||| |||||| |||  || |||||||| ||||||||||||    
T  27162944 attgtcatttgtttgtatgtgtattaaatttaactttttcatatttcaagacaagttaatagtattaatta 27162874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 28038921 - 28038859
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| ||| |||||| |||||||||||||| |||  || ||||||||| |||||||||||    
T  28038921 tttgtttgtatttgtattaaatttaacttttcatatttcaagacaagttagcagtattaatta 28038859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42983654 - 42983584
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||| | ||||| ||| |||||| ||||| |||||||| |||  || ||||||||||||||||||||||    
T  42983654 attgtcttatgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaattaa 42983584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43601205 - 43601139
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaa 67  Q
    |||||| ||||||||||| |||||| ||||| |||||||| |||  || ||||||||||| ||||||    
T  43601205 attgtcctttgtttatatgtgtattaaatttgacttttcatatttcaagacaagttagtaatattaa 43601139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13907783 - 13907714
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| | || | ||||| |||||||| |||  || |||||||||||||||||||||    
T  13907783 attgtcatttgtttgtatgtttaataaatttgacttttcatatttaaagacaagttagtagtattaatta 13907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40263776 - 40263845
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || | ||| |||||||||||||||    
T  40263776 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagataagatagtagtattaatta 40263845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 10408607 - 10408539
Alignment:
Q  2 ttgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||| ||||||| ||| |||||| ||||| | |||||| |||  ||| ||||||||||||||||||||    
T  10408607 ttgtcctttgtttgtatgtgtattaaatttgatttttcatatttcaatgcaagttagtagtattaatta 10408539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 39102798 - 39102750
Alignment:
Q  22 tatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||| |||||| | |||| || |||||||||||||||||||||    
T  39102798 tatttaatttgactttttatattccaagacaagttagtagtattaatta 39102750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36309637 - 36309568
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| ||| ||| ||||||||||| |||||||||    
T  36309637 attgtcatttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttagtattattaatta 36309568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 7727378 - 7727321
Alignment:
Q  13 ttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| |||| |||||||| |||| || |||||||||||||||||||||    
T  7727378 ttatatgtgtatttcatttgacttttcatattccaagacaagttagtagtattaatta 7727321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30262579 - 30262510
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| ||| || ||| |||||||||| |||  || |||||||||||||||||||||    
T  30262579 attgtcatttgtttgtatgtgtcttaaatctaacttttcaaatttcaagacaagttagtagtattaatta 30262510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38761399 - 38761330
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  38761399 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaatta 38761330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 45185308 - 45185237
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||| ||||||| ||| |||||| | ||| |||||||| ||| ||| |||||||||||||||| ||||||    
T  45185308 attgtcctttgtttgtatgtgtattcattttgacttttcaaattttaagacaagttagtagtattgattaag 45185237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2562771 - 2562701
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacatt-ctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| ||| |||| ||||| |||||||||||||||    
T  2562771 attgtcctttgtttgtatgtgtattaaatttgacttttcatattactaagacaagatagtagtattaatta 2562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12762907 - 12762976
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || ||||||||||| |||||||||    
T  12762907 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtaatattaatta 12762976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23399818 - 23399749
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  ||  ||||||||||||||||||||    
T  23399818 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaaaccaagttagtagtattaatta 23399749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24276598 - 24276529
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| ||||| || |||  || ||||||||||| |||||||||    
T  24276598 attgtcatttgtttgtatgtgtattaaattttactttacatatttcaaaacaagttagtaatattaatta 24276529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25888660 - 25888729
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| | |||||| ||| ||| |||| |||||| |||||||||    
T  25888660 attgtcatttgtttgtatgtgtattaaatttgatttttcatattttaagacaaattagtactattaatta 25888729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31746446 - 31746377
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  ||  |||||||||| |||||||||    
T  31746446 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaaagcaagttagtattattaatta 31746377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 33385317 - 33385382
Alignment:
Q  7 atttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||||||||| | |||| ||||| |||||||  |||  || |||||||||||||||||||||||    
T  33385317 atttgtttatatgtatattaaatttgacttttcgtatttcaagacaagttagtagtattaattaag 33385382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36437566 - 36437631
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtatta 66  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||    
T  36437566 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagtatta 36437631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40517805 - 40517874
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||| | |||  || |||||||||||||||||||||    
T  40517805 attgtcctttgtttgtatgtgtattaaatttgactttttaaatttcaagacaagttagtagtattaatta 40517874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43191518 - 43191449
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||||| |||||| |||  || | |||||||||| ||||||||    
T  43191518 attgtcatttgtttgtatgtgtattaaatttaaattttcatatttcaagataagttagtaggattaatta 43191449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 41087046 - 41087110
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||||| ||| |||||| ||||| | |||||| |||  || |||||||||||||||||||||||    
T  41087046 tttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagttagtagtattaattaag 41087110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45183902 - 45183842
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtag 61  Q
    |||||| ||||||||||| |||||| ||||| |||||||| |||  || ||||||||||||    
T  45183902 attgtcctttgtttatatgtgtattaaatttgacttttcaaatttgaagacaagttagtag 45183842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 45203824 - 45203892
Alignment:
Q  2 ttgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||| ||||||| |||  ||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  45203824 ttgtcctttgtttgtatgcgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 45203892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2917141 - 2917072
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| |||||||||||| | ||| ||| |||||||||||||||||||||    
T  2917141 attgtcttttgtttgtatgtgtattaaatttaactttttatattttaagacaagttagtagtattaatta 2917072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11459218 - 11459291
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaagag 74  Q
    |||||| ||||||| |||||||||| ||||| | |||||| |||  || |||||||||||||||||||||||||    
T  11459218 attgtcctttgtttgtatatgtattaaatttgatttttcaaatttcaagacaagttagtagtattaattaagag 11459291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17251001 - 17250931
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||||||||||| ||| ||||||||| || |||||||| |||  || ||||| ||||||||||||||||    
T  17251001 attgtcatttgtttgtatgtgtatttaaattgacttttcatatttcaagacaagatagtagtattaattaa 17250931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2654366 - 2654435
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||||||| |||||||||||| | |||||| ||| ||| | |||||| ||||||||||||    
T  2654366 attgtcttttgtttatatgtgtatttaatttgatttttcatattttaagataagttaatagtattaatta 2654435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23464748 - 23464817
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||| ||| |||||||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  23464748 attgtcctttatttgtatatgtattaaatttgacttttcatatttcaaaacaagttagtagtattaatta 23464817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41665775 - 41665844
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| |||||||||||||| |||  || |||||||| ||||||||||||    
T  41665775 attgtcctttgtttgtatgtgtattaaatttaacttttcatatttcaagacaagttaatagtattaatta 41665844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34330067 - 34330134
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaat 68  Q
    |||||| ||||||| ||| |||||| |||||||||||||| |||  || ||||| |||||||||||||    
T  34330067 attgtcctttgtttgtatgtgtattaaatttaacttttcatatttcaagacaagatagtagtattaat 34330134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 40533128 - 40533194
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||| ||||||| |||||||||||| |||||| | ||| ||| |  |||||||||||||||||||    
T  40533128 tcatttatttatatttgtatttaatttgactttttatattttaagaagagttagtagtattaattaa 40533194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 45214797 - 45214859
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| ||| |||||| |||||||||||||| ||| ||| | || ||||||||||||||||    
T  45214797 tttgtttgtatgtgtattaaatttaacttttcatattttaagataaattagtagtattaatta 45214859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 375385 - 375316
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| | |||||| |||  || |||||||||||||||| ||||    
T  375385 attgtcatttgtttgtatgtgtattaaatttgatttttcatatttcaagacaagttagtagtattgatta 375316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28190663 - 28190732
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| |||||||||| | ||||| |||||| |||  || |||| ||||||||| ||||||    
T  28190663 attgtcatttgtttgtatatgtattaagtttaatttttcatatttcaagacaatttagtagtaataatta 28190732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42250919 - 42250850
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||| ||||||| |||||| ||||| |||||| | |||  || |||||||| ||||||||||||    
T  42250919 attgtcatttatttatatgtgtattaaatttgactttttatatttcaagacaagttaatagtattaatta 42250850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44424660 - 44424729
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  44424660 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaatta 44424729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 13534487 - 13534539
Alignment:
Q  18 tatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  13534487 tatgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 13534539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 291674 - 291605
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| |||||||||||| | ||| ||| | |||||||||||||||||||    
T  291674 attgtcatttgtttgtatttgtattaaatttaactttttatattttaagataagttagtagtattaatta 291605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4817945 - 4817872
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaagag 74  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||||||    
T  4817945 attgtcttttgtttgtatgtgtattaaatttgacttttcaaatttcaagacaagttagtagtattaattaagag 4817872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4829745 - 4829672
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaagag 74  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||||||    
T  4829745 attgtcttttgtttgtatgtgtattaaatttgacttttcaaatttcaagacaagttagtagtattaattaagag 4829672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 34012558 - 34012622
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||||||||| |||||| |||||||||||||| |||  || ||||| |||||||||||||||||    
T  34012558 tttgtttatatgtgtattaaatttaacttttcatatttcaagacaagatagtagtattaattaag 34012622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 51390576 - 51390505
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || ||||||||||||| |||||||||    
T  51390576 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagttagtagttttaattaag 51390505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 1596269 - 1596220
Alignment:
Q  22 tatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  1596269 tattgaatttaacttttcacattccaaaacaagttggtagtattaattaa 1596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23982631 - 23982562
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||| ||||||||| |||||||||| ||||| |||||||| |||  || | |||||||||||||||||||    
T  23982631 attgacatttgtttgtatatgtattaaatttgacttttcatatttcaagataagttagtagtattaatta 23982562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32152222 - 32152291
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||| |||||||| ||| |||||| ||||| |||||||| ||| ||| | |||||||||||||||||||    
T  32152222 attgttatttgtttgtatgtgtattaaatttgacttttcatattttaagataagttagtagtattaatta 32152291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47643604 - 47643675
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||| |||||||  || |||||| ||||| |||||||| |||  || |||||||||||||||||||||||    
T  47643604 attgtcctttgtttgcatgtgtattaaatttgacttttcaaatttcaagacaagttagtagtattaattaag 47643675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 51997026 - 51997093
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacatt-ctaatacaagttagtagtattaattaagag 74  Q
    ||||||| ||| |||||| ||||| |||||||| ||| | || |||||||||||||||||||||||||    
T  51997026 tttgtttgtatgtgtattaaatttgacttttcaaatttcaaagacaagttagtagtattaattaagag 51997093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 34028521 - 34028471
Alignment:
Q  20 tgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||| |||||||| |||| ||  ||||||||||||||||||||    
T  34028521 tgtatttaatttgacttttcatattccaaggcaagttagtagtattaatta 34028471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35366023 - 35365953
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaa 71  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| ||| ||| ||||||||  ||||||||||||    
T  35366023 attgtcttttgtttgtatgtgtattaaatttgacttttcatattttaagacaagttaacagtattaattaa 35365953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 40612991 - 40612929
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||| || |||||||||||| |||||||| |||  | || |||||||||||||||||||    
T  40612991 tttgtttaaatgtgtatttaatttgacttttcatatttcattataagttagtagtattaatta 40612929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 44652893 - 44652831
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  44652893 tttgtttgtatgtgtattaaatttgacttttcatatttcaaaacaagttagtagtattaatta 44652831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3143467 - 3143536
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  3143467 attgtcttttgtttttatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaatta 3143536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8984700 - 8984631
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||| |||||||| |||  || | || ||||||||||||||||    
T  8984700 attgtcatttgtttgtatgtgtattaaatttgacttttcatatttcaagataaattagtagtattaatta 8984631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20564839 - 20564908
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| |||||||  || |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  20564839 attgtcttttgtttgaatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 20564908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32144375 - 32144444
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||  ||||| |||||||| ||| ||| |||||||| || |||||||||    
T  32144375 attgtcatttgtttgtatgtgtataaaatttgacttttcatattttaagacaagttaataatattaatta 32144444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47071000 - 47070931
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| |||  ||||| ||||| | |||||| |||  || |||||||||||||||||||||    
T  47071000 attgtcatttgtttgtatgcgtattaaatttgatttttcatatttcaagacaagttagtagtattaatta 47070931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48721907 - 48721838
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || ||||| |||||||||||||||    
T  48721907 attgtcctttgtttgtatgtgtattaaatttgacttttcatatttcaagacaagatagtagtattaatta 48721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 5926 - 5866
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaat 68  Q
    |||||| |||| |||||||||||| |||||||| | | |||||||||||||||||||||||    
T  5926 tttgttcatatgtgtatttaatttgacttttcataatttaatacaagttagtagtattaat 5866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1763878 - 1763949
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    |||||| ||||||| ||| |||||| ||||| |||||||| |||  || |||||||||||||||||||||||    
T  1763878 attgtcctttgtttgtatgtgtattaaatttgacttttcaaatttcaagacaagttagtagtattaattaag 1763949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 197492 - 197423
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||||| ||||   ||| ||| |||||||||||||||||||||    
T  197492 attgtcatttgtttgtatgtgtattaaatttaattttttcaattttaagacaagttagtagtattaatta 197423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3729487 - 3729556
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||||||| ||| |||||| ||||||||||| || |||  || ||||||||||| |||||||||    
T  3729487 attgtcatttgtttgtatgtgtattaaatttaactttacatatttcaagacaagttagtaatattaatta 3729556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31945953 - 31945884
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| ||||||||||| |||||| ||||| ||||| || |||  || |||||||||||||||||||||    
T  31945953 attgtcgtttgtttatatgtgtattaaatttgactttacatatttcaagacaagttagtagtattaatta 31945884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16327188 - 16327258
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagtta-gtagtattaatta 70  Q
    |||||||||||||| ||| |||||| |||||||||||||| |||  || ||||||||  ||||||||||||    
T  16327188 attgtcatttgtttgtatttgtattaaatttaacttttcatatttcaagacaagttatttagtattaatta 16327258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16350586 - 16350656
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagtta-gtagtattaatta 70  Q
    |||||||||||||| ||| |||||| |||||||||||||| |||  || ||||||||  ||||||||||||    
T  16350586 attgtcatttgtttgtatttgtattaaatttaacttttcatatttcaagacaagttatttagtattaatta 16350656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 31536084 - 31536146
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||||||| |||||| ||||| |||||||| |||  || | |||||||||||||||||||    
T  31536084 tttgtttatatgtgtattaaatttgacttttcatatttcaagataagttagtagtattaatta 31536146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15981859 - 15981928
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    ||||||||| |||| ||| ||| || |||||||||||||| |||  || |||||||| ||||||||||||    
T  15981859 attgtcattagtttgtatgtgtcttaaatttaacttttcatatttcaagacaagttaatagtattaatta 15981928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 31039215 - 31039280
Alignment:
Q  5 tcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||||| ||| || ||||||||| |||||||| |||  || |||||||||||||||| ||||    
T  31039215 tcatttgtttgtatgtgcatttaatttgacttttcatatttcaagacaagttagtagtattgatta 31039280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 30248944 - 30248996
Alignment:
Q  18 tatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  30248944 tatgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 30248996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 30466002 - 30465938
Alignment:
Q  8 tttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaattaag 72  Q
    ||||||| ||| |||||| ||||| |||||||| |||  || | |||||||||||||||||||||    
T  30466002 tttgtttgtatgtgtattaaatttgacttttcatatttcaagataagttagtagtattaattaag 30465938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7642 - 7708
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaa 67  Q
    |||||| ||||||||||| |||||| ||||| |||||||| |||  || ||||||||||| ||||||    
T  7642 attgtcctttgtttatatgtgtattaaatttgacttttcatatttcaagacaagttagtaatattaa 7708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 99857 - 99788
Alignment:
Q  1 attgtcatttgtttatatatgtatttaatttaacttttcacattctaatacaagttagtagtattaatta 70  Q
    |||||| |||||||  || |||||| ||||| |||||||| |||  || |||||||||||||||||||||    
T  99857 attgtcttttgtttgaatgtgtattaaatttgacttttcatatttcaagacaagttagtagtattaatta 99788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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