View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1299_2D_high_65 (Length: 227)
Name: NF1299_2D_high_65
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36207142 - 36206919
Alignment:
| Q |
1 |
attggtcagttctgttctatggctccacctatttgtacttgatcgtttctctcctagagtcccttcaatatagtcagcaacacgcccaaaatgaaaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36207142 |
attggtcagttctgttctatggctccacctatttgtacttgatcgtttctctcctagagtcccttcaatatagtcagcaacacgcccaaaatgaaaagaa |
36207043 |
T |
|
| Q |
101 |
caatgataagacagtcactcatgctacaacatcaccaatggttatgcacgaagccacataacatctactagctaggaacaacactcaagctaaaacactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36207042 |
caatgataagacagtcactcatgctacaacatcaccaatggttatgcacgaagccacataacatctactagctaggaacaacactcaagctaaaacactt |
36206943 |
T |
|
| Q |
201 |
actgcccaaactatgcttacaggt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36206942 |
actgcccaaactatgcttacaggt |
36206919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 400621 - 400572
Alignment:
| Q |
116 |
cactcatgctacaacatcaccaatggttatgcacgaagccacataacatc |
165 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
400621 |
cactcctgctccaacatcaccaatggttatgtaagaagccacacaacatc |
400572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 10989228 - 10989369
Alignment:
| Q |
81 |
cacgcccaaaatgaaaagaacaatgataagacagtcactcatgctacaacatcaccaatggttatgcacgaagccacataacatctactagctaggaaca |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||||||||||| | ||||| || ||| ||||||||| ||||||| || | ||||||| |
|
|
| T |
10989228 |
cacgcccaaactgaaaagaacaatgataaggtagtcacttatgctacaacatctcaaatggatacgcaagaagccacacaacatctgataccaaggaaca |
10989327 |
T |
|
| Q |
181 |
acactcaagctaaaacacttactgcccaaactatgcttacag |
222 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
10989328 |
acaatcaagccaaaacacatactgcccaaactatgattacag |
10989369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University