View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1299_2D_high_68 (Length: 217)
Name: NF1299_2D_high_68
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32592519 - 32592312
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32592519 |
ttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcac |
32592420 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32592419 |
tctctccagccctctgcatagcaataattttcgtctccgcgttaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacc |
32592320 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
32592319 |
tttcatct |
32592312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 31527430 - 31527619
Alignment:
| Q |
19 |
gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcactctctccagccctctgca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31527430 |
gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctccagccctctgca |
31527529 |
T |
|
| Q |
119 |
tagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacctttcatct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31527530 |
tagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
31527619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 51824851 - 51825025
Alignment:
| Q |
37 |
tcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcactctctccagccctctgcatagcaataattttcgtct |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
51824851 |
tcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgttactctctccagccctctgcatcgcaataactttcgtct |
51824950 |
T |
|
| Q |
137 |
ccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacctttcatctcag |
211 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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|
| T |
51824951 |
ctgcgtcaatttttgctgcattctgcagtgtttgtccttccctagatttcgaaccaacttcacctttcatctcag |
51825025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 37030805 - 37031012
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||| | | ||||||||| |||| |
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|
| T |
37030805 |
ttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctccttctcac |
37030904 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||| |
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|
| T |
37030905 |
cctctccagctctctgcattgcaataaccttcgtctctgcatcaattttcgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacc |
37031004 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
37031005 |
tttcatct |
37031012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49188294 - 49188501
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||| |||| |
|
|
| T |
49188294 |
ttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattccctccttctcac |
49188393 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| |
|
|
| T |
49188394 |
cctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacc |
49188493 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
49188494 |
tttcatct |
49188501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49192030 - 49192237
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | | |||||||||||| | |
|
|
| T |
49192030 |
ttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaaaaccttcacttcagtcctcactttaattccctccttgtcgc |
49192129 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| || ||||||||||||||||| |||| || |||| ||||| |
|
|
| T |
49192130 |
cctctccagccctctgcatcgcaataatctttgtctctgcatcaatttttgctgcattttgtagtgtttgtccttccctcaatttcgaaccaatctcacc |
49192229 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
49192230 |
tttcatct |
49192237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49208307 - 49208514
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | | ||||| || |||| |
|
|
| T |
49208307 |
ttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctgtttctcac |
49208406 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || |||||||| ||||| ||||| | |||||||||||||| ||||||| |||| |||||| |
|
|
| T |
49208407 |
cttctccagccctctgcatcgcaataaccttcgtctctgcatcaattttcgctgcgttctggatcgtttgtccttccctcaattttgaaccaatttcacc |
49208506 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
49208507 |
tttcatct |
49208514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49213147 - 49213354
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||| | | ||||| ||| |||| |
|
|
| T |
49213147 |
ttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaatactttcacttcagttctcactttaattccctgcttctcac |
49213246 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
| ||||| ||||| ||||| || |||| |||||||| || ||||||||||||||||||||||| ||||||||| |||| |||| || |||| |||||| |
|
|
| T |
49213247 |
tttctcctgccctttgcatcgctataaccttcgtctctgcatcaatttttgctgcattctgcagcgtttgtcctaccctcaatttcgaaccaatttcacc |
49213346 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
49213347 |
tttcatct |
49213354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 49203136 - 49203310
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| | | |||||||||||||| |
|
|
| T |
49203136 |
ttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccctccttgtcac |
49203235 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtcctt |
175 |
Q |
| |
|
|| ||| | |||||||| ||||||| ||| ||||| || ||||| || |||||||||||||| |||| ||||| |
|
|
| T |
49203236 |
cctatccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagcgtttttcctt |
49203310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26756673 - 26756880
Alignment:
| Q |
1 |
ttcttcttcgccaactcagaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactcttaatccctccttgtcac |
100 |
Q |
| |
|
|||||||| | |||||| ||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||| | | | | ||||| ||| |
|
|
| T |
26756673 |
ttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaaccttcacttcagtcctaactttaatttcttccttctcag |
26756772 |
T |
|
| Q |
101 |
tctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctatattttgagccaacttcacc |
200 |
Q |
| |
|
|||||||||||||||| | ||||| | ||||||||| || |||||||| |||||||||||||| |||||||||| ||| |||| || ||||||||||| |
|
|
| T |
26756773 |
cctctccagccctctgcgtcgcaatgactttcgtctctgcatcaattttcgctgcattctgcagcgtttgtcctttcctcgatttcgatccaacttcacc |
26756872 |
T |
|
| Q |
201 |
tttcatct |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
26756873 |
tttcatct |
26756880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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