View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_100 (Length: 292)
Name: NF1299_2D_low_100
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_100 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 45142489 - 45142235
Alignment:
| Q |
19 |
acctctcagccatatagcttctttgattgcttcatcaagacttgaatctattgttatgaaacaatagattaaaattggatccaaggaaattcttgaaatt |
118 |
Q |
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| T |
45142489 |
acctctcagccatatagcttctttgattgcttcatcaagacttcaatctattgttatgaaataatagattaaaattggatgcaaggaaattcttgaaatt |
45142390 |
T |
|
| Q |
119 |
gaattgaagtcgaaacacacacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45142389 |
gaattgaagtcgaaacacacacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggt |
45142290 |
T |
|
| Q |
219 |
cgatctcatcactatgatcaagaattacaaggctttcctttctaatagtaggaac |
273 |
Q |
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| T |
45142289 |
cgatctcatcactatgatcaagaattacaaggctttcctttctaatagtaggaac |
45142235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
178 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
229 |
Q |
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| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
205 |
atcctcactgaggtcgatctcatcactatgatcaag |
240 |
Q |
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| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
205 |
atcctcactgaggtcgatctcatcactatgatcaag |
240 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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