View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_104 (Length: 289)

Name: NF1299_2D_low_104
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_104
NF1299_2D_low_104
[»] chr7 (10 HSPs)
chr7 (17-277)||(23993185-23993445)
chr7 (183-255)||(24001868-24001940)
chr7 (183-255)||(24010052-24010124)
chr7 (40-101)||(24002034-24002095)
chr7 (179-243)||(24035432-24035496)
chr7 (201-272)||(15440704-15440775)
chr7 (201-272)||(15508401-15508472)
chr7 (50-101)||(24010218-24010269)
chr7 (40-94)||(26256617-26256671)
chr7 (23-99)||(15508583-15508659)
[»] chr8 (2 HSPs)
chr8 (42-107)||(11345277-11345342)
chr8 (42-107)||(11338752-11338817)
[»] chr1 (1 HSPs)
chr1 (209-273)||(17954036-17954100)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 23993445 - 23993185
Alignment:
Q  17 aaatctgaaggcagcagaaacgtcttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgtaagtcatcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993445 aaatctgaaggcagcagaaacgtcttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgtaagtcatcc 23993346  T
Q  117 aattaatagtgccattaaaatgcacaccgtcgttgaggtgactgtgtcgaatatgaacattaaaccaattaagaggaaccgcagtaaagctctgaatatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993345 aattaatagtgccattaaaatgcacaccgtcgttgaggtgactgtgtcgaatatgaacattaaaccaattaagaggaaccgcagtaaagctctgaatatt 23993246  T
Q  217 tctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagcttcattc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23993245 tctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagcttcattc 23993185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 24001940 - 24001868
Alignment:
Q  183 aattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacctc 255  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||| | || |||||||| |||| ||||||    
T  24001940 aattaagaggaaacacaggaaagctctgaatatttctccaacaattacttccaagactgaaaactttaacctc 24001868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 24010124 - 24010052
Alignment:
Q  183 aattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaagacttcaacctc 255  Q
    |||||||||||| | ||  |||||||||||||| ||||||||||||||  ||||||||||| |||| ||||||    
T  24010124 aattaagaggaagcacaagaaagctctgaatatctctccaacaattatctcctagactgaaaactttaacctc 24010052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 24002095 - 24002034
Alignment:
Q  40 cttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatag 101  Q
    ||||||||  |||||||||||||||||||||| ||||  |||||||||| | ||||||||||    
T  24002095 cttgtatgattccgttgaaaggtcaagtgaaacaatcacaaattgctcaacgtgaataatag 24002034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 24035496 - 24035432
Alignment:
Q  179 aaccaattaagaggaaccgcagtaaagctctgaatatttctccaacaattattacctagactgaa 243  Q
    ||||||||||||||||    || ||||||||||||||||||||||||||||| ||| ||| ||||    
T  24035496 aaccaattaagaggaaatataggaaagctctgaatatttctccaacaattatcaccaagattgaa 24035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 15440775 - 15440704
Alignment:
Q  201 taaagctctgaatatttctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagctt 272  Q
    |||||||||  ||||||||||||||||||||||| |||| ||| |||| |||| |  ||||||| |||||||    
T  15440775 taaagctctctatatttctccaacaattattaccaagacggaaaactttaaccacatttttccatgaagctt 15440704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 15508472 - 15508401
Alignment:
Q  201 taaagctctgaatatttctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagctt 272  Q
    |||||||||  ||||||||||||||||||||| | |||||||| |||| |||| |  ||||||| |||||||    
T  15508472 taaagctctctatatttctccaacaattattaacaagactgaaaactttaaccacatttttccatgaagctt 15508401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 24010269 - 24010218
Alignment:
Q  50 tccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatag 101  Q
    |||||||||||||||||||||| ||||  |||||||||| | ||||||||||    
T  24010269 tccgttgaaaggtcaagtgaaacaatcgcaaattgctcaacgtgaataatag 24010218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 26256671 - 26256617
Alignment:
Q  40 cttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatga 94  Q
    ||||||||||||||||||||| ||||| |||| ||||  |||||||||| |||||    
T  26256671 cttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgctcaacatga 26256617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 15508659 - 15508583
Alignment:
Q  23 gaaggcagcagaaacgtcttgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataat 99  Q
    |||||||||||||||  ||||||| | || || ||||||||||||| || ||||  |||||||||| ||||| ||||    
T  15508659 gaaggcagcagaaaccgcttgtatttttctgtcgaaaggtcaagtgcaacaatcataaattgctcaacatgagtaat 15508583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 11345277 - 11345342
Alignment:
Q  42 tgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgt 107  Q
    |||||||||| |||||||||||||| |||| |||||  ||||| ||| ||||| ||||||||||||    
T  11345277 tgtatgtctcagttgaaaggtcaagggaaacaatcttgaattgatcaacatgagtaatagacttgt 11345342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 11338752 - 11338817
Alignment:
Q  42 tgtatgtctccgttgaaaggtcaagtgaaagaatctgaaattgctcagcatgaataatagacttgt 107  Q
    |||||||||| |||||||| ||||| |||| |||||  ||||| ||| ||||| ||||||||||||    
T  11338752 tgtatgtctcagttgaaagatcaagggaaacaatcttgaattgatcaacatgagtaatagacttgt 11338817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 17954036 - 17954100
Alignment:
Q  209 tgaatatttctccaacaattattacctagactgaagacttcaacctcgcttttccacgaagcttc 273  Q
    |||||||||||||||||||||| ||| | |||| | |||| ||||||||||||| | ||||||||    
T  17954036 tgaatatttctccaacaattatcacccaaactgtaaactttaacctcgcttttcaatgaagcttc 17954100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University