View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_11 (Length: 994)
Name: NF1299_2D_low_11
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 322 - 738
Target Start/End: Original strand, 4186551 - 4186968
Alignment:
| Q |
322 |
aatgggtttcttgtggattcaaagtggttggattagtcatgattcttgtcactatcagattatggcgaactgtaattggaactggtttagtcagatcctt |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4186551 |
aatgggtttcttgtggattcaaagtggttggattagtcatgattcttgtcactatcagattatggcgaactgtaattggaactggtttgttcagatcctt |
4186650 |
T |
|
| Q |
422 |
tctggaaattttctttctggtataagcatggagtggtggaaatggaaccacaatgcacaccaccttgcttgtaatagtcttgattttgaccctgaccttc |
521 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4186651 |
tctggaaattttctttctagtataagcatggagtggtggaaatggaaccacaatgcacaccaccttgcttgtaatagtcttgattttgaccctgaccttc |
4186750 |
T |
|
| Q |
522 |
aacatttacccttttttgttgtctcttcaaagttctttacttcactcacttcttgttttcatgataggaagatgaactttgattcttttgctaggttctt |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4186751 |
aacatttacccttttttgttgtctcttcaaagttctttacttcactcacttcttgttttcatgataggaagatgaactttgattcttttgctaggttctt |
4186850 |
T |
|
| Q |
622 |
ggttagttaccaacattgg-gttattatcctggtatgtggttagctaggttcaatttgtttgctcaatcttttttcttgctactgtctagtaggaaagtt |
720 |
Q |
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||||||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
4186851 |
ggttagttaccaacattggagttattgtcctggtatatgtttagctaggttcaatttgtttgctcgatcttttttcttgctactgtctaataggaaagtt |
4186950 |
T |
|
| Q |
721 |
cccaatagaaagatagaa |
738 |
Q |
| |
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|||||||||||||||||| |
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| T |
4186951 |
cccaatagaaagatagaa |
4186968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 4186230 - 4186483
Alignment:
| Q |
1 |
ccaccatcccggtggcgaattccctctactcagccttgccggccaagaggttactgaagcattccttgctttccaccctcccaccgcctacaaccgcctc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4186230 |
ccaccatcccggtggcgaattccctctaatcagccttgccggccaagaggttactgaagcattccttgctttccaccctcccaccgcctacaaccgcctc |
4186329 |
T |
|
| Q |
101 |
aacaccttcttcaccggaagttacctctgtgactgcgccgtctctgatgtgtcccgtgattaccagaatctcttctccgaactgaccgagacggggttct |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4186330 |
aacaccttcttcaccggaagctacctctgtgactgcgccgtctctgatgtgtcccgtgattaccagaatctcttctccgaactgaccgagatggggttct |
4186429 |
T |
|
| Q |
201 |
tcgaatataaaggatgtggtgttttactcatgatttcattaatcattgttatgc |
254 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4186430 |
tcgaatataaaggatgtggtgttttactcatgatttcgttaatcattgttatgc |
4186483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 335 - 734
Target Start/End: Original strand, 4195596 - 4195996
Alignment:
| Q |
335 |
tggattcaaagtggttggattagtcatgattcttgtcactatcagattatggcgaactgtaattggaactggtttagtcagatcctttctggaaattttc |
434 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |||| |||||| |||||| ||| | || ||||| ||||| ||||| |||||||| ||| ||| |
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| T |
4195596 |
tggattcaaagtggttggattggtcatgattctggtcattatcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttc |
4195695 |
T |
|
| Q |
435 |
tttctggtataagcatggagtggtggaaatggaaccacaatgcacaccaccttgcttgtaatagtcttgattttgaccctgaccttcaacatttaccctt |
534 |
Q |
| |
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|| ||||||||||||| || |||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| || |
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| T |
4195696 |
ttgctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttaccttt |
4195795 |
T |
|
| Q |
535 |
ttttgttgtctcttcaaagttctttacttcactcacttcttgttttcatgataggaagatgaactttgattcttttgctaggttcttggttagttaccaa |
634 |
Q |
| |
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||||||||| || || |||||||| |||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4195796 |
ttttgttgtttcctccaagttcttcacttcactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccag |
4195895 |
T |
|
| Q |
635 |
cattgg-gttattatcctggtatgtggttagctaggttcaatttgtttgctcaatcttttttcttgctactgtctagtaggaaagttcccaatagaaaga |
733 |
Q |
| |
|
|||||| |||||||||||| |||||| || |||||| | |||||||||||||||||||| || ||| | | |||| ||| ||||| || |||||||||| |
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| T |
4195896 |
cattggagttattatcctgttatgtgttttgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaaga |
4195995 |
T |
|
| Q |
734 |
t |
734 |
Q |
| |
|
| |
|
|
| T |
4195996 |
t |
4195996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 793 - 954
Target Start/End: Original strand, 4187023 - 4187184
Alignment:
| Q |
793 |
cctaattggggtgagagggttttgtttgtaattgctagtttttctgtgactggtattcaacatgttcagttcactttgaatcatttttctgcaagtgtct |
892 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4187023 |
cctaattggggtgagagagttttgtttgtaattgctagtttttctgtgactggtattcaacatgttcagttcactttcaatcatttttctgcaagtgtct |
4187122 |
T |
|
| Q |
893 |
atattggtcaaccaacatcccatgattggtttgagaagcaaactagtgggactcttgatgtc |
954 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4187123 |
atattggtcaaccaacatcgcatgattggtttgagaagcaaactagtgggactcttgatgtc |
4187184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 793 - 953
Target Start/End: Original strand, 4196055 - 4196215
Alignment:
| Q |
793 |
cctaattggggtgagagggttttgtttgtaattgctagtttttctgtgactggtattcaacatgttcagttcactttgaatcatttttctgcaagtgtct |
892 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| | |
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| T |
4196055 |
cctaattggggtgagagggttttatttgtgcttgctagtttttgtgtgactgggattcaacatgttcagtttactttgaatcatttttcggctagtgttt |
4196154 |
T |
|
| Q |
893 |
atattggtcaaccaacatcccatgattggtttgagaagcaaactagtgggactcttgatgt |
953 |
Q |
| |
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|| |||||| ||| || | ||||||||||||||||||||| || ||| ||||||||||| |
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|
| T |
4196155 |
atgttggtccaccgacggctcatgattggtttgagaagcaagctcatggaactcttgatgt |
4196215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4195262 - 4195342
Alignment:
| Q |
1 |
ccaccatcccggtggcgaattccctctactcagccttgccggccaagaggttactgaagcattccttgctttccaccctcc |
81 |
Q |
| |
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|||||||||||| ||||| | ||||| |||| ||| ||||||||||| || || || |||||||| |||||||||||||| |
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| T |
4195262 |
ccaccatcccggcggcgagcttcctctcctcaacctcgccggccaagatgtcaccgatgcattcctcgctttccaccctcc |
4195342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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