View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_112 (Length: 270)
Name: NF1299_2D_low_112
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 54605526 - 54605774
Alignment:
| Q |
1 |
ccaaaaatcaatgataaaggaaaatcaataataaatatagttttatgttatttgcatttgatatgggataatcttcttttacacttgtatcttttacatt |
100 |
Q |
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| T |
54605526 |
ccaaaaatcaacgataaaggaaaatcaataataaatatagttttatgttatttgcatttgttatgggataatcttcttttacatttgtatcttctacatt |
54605625 |
T |
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| Q |
101 |
ttgtagttcaaaatgattgacattttatgcattttgagatgatacacatgtaattggagcataaggtgtttgttgatttatgagtgaaatctgctctcnn |
200 |
Q |
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| T |
54605626 |
ttgtagttcaaaatgattgacattttatgcattttgagatgatacacatgtaattggagcataaggtgtttgttgatttatgactgaaatctgctct--t |
54605723 |
T |
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| Q |
201 |
nnnnnncccttctttctgttaggtatatcatcaagcattggtggagctaga |
251 |
Q |
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| T |
54605724 |
tttttttccttctttctgttaggtatatcatcaagcattggtggagttaga |
54605774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 40193549 - 40193412
Alignment:
| Q |
41 |
ttttatgttatttgcatttgatatgggataatcttcttttacacttgtatcttttacattttgta-gttcaaaatgattgacattttatgcattttgaga |
139 |
Q |
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|||||| ||||||||||||| | |||||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
40193549 |
ttttatcttatttgcatttgttccaggataatcttcttttacatttgtatcttctacatcttgtttgttcaaaatgattgacattttatgcattttgaga |
40193450 |
T |
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| Q |
140 |
tgatacacatgtaattggagcataaggtgtttgttgat |
177 |
Q |
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| T |
40193449 |
tgatgcattattaattggagcataaggtggctgttgat |
40193412 |
T |
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