View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_115 (Length: 261)
Name: NF1299_2D_low_115
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_115 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 15938471 - 15938700
Alignment:
| Q |
17 |
aattagacatgagttttgactagaagcatgtttagtctctgtttgtgtcggtgcactttgacataatgtaattgttagaagaaaacgaaagtttgtgtgt |
116 |
Q |
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| T |
15938471 |
aattagacatgagttttgactagaagcatgtttaatctctgtttgtgtcggtgcactttgacataatgtaattgttagaagaaaacgaaagtttgtgtgt |
15938570 |
T |
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| Q |
117 |
tatgaattttgaaagaaggtgaaagaaatgcaaatacatagcattcagtttaatttgtaccacataaattgtcggttcactttgacatgaacactccaac |
216 |
Q |
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| T |
15938571 |
tatgaattttgaaagaaggtgaaagaaatgcaaatacatagcattcagtttaatttgtaccacataaattgtcggttcactttgacatgaacactccaac |
15938670 |
T |
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| Q |
217 |
aacaaaaaatattcaaatctttctctcact |
246 |
Q |
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| T |
15938671 |
aacaaaaaatattcaaatctttctctcact |
15938700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 39821566 - 39821642
Alignment:
| Q |
17 |
aattagacatgagttttgactagaagcatg-tttagtctctgtttgtgtcggtgcactttgacataatgtaattgtt |
92 |
Q |
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| T |
39821566 |
aattggacatgagctttgactagaagcatgcttgggtcggtgcttgtgtgggtgcactttgacatgatgaaattgtt |
39821642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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