View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1299_2D_low_118 (Length: 260)
Name: NF1299_2D_low_118
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_118 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 32592498 - 32592706
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
32592498 |
attctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttgca |
32592597 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtcca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
32592598 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaaggttagtcca |
32592697 |
T |
|
| Q |
232 |
tgcaaatat |
240 |
Q |
| |
|
||||||||| |
|
|
| T |
32592698 |
tgcaaatat |
32592706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 31527412 - 31527260
Alignment:
| Q |
88 |
gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31527412 |
gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt |
31527313 |
T |
|
| Q |
188 |
tacttagcaaagctagtgttgagtatgaaaccaaggttagtccatgcaaatat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31527312 |
tacttagcaaagctagtgttgagtatgaaaccaaggttagtccatgcaaatat |
31527260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 37030826 - 37030630
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||| ||||||||||||||||| || |
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|
| T |
37030826 |
attctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagttaca |
37030727 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt |
228 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||| | |||||||||||||||||| |
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|
| T |
37030726 |
aggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
37030630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 51824843 - 51824717
Alignment:
| Q |
34 |
tctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgcagg |
133 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| | |
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|
| T |
51824843 |
tctgagttggcgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaag |
51824744 |
T |
|
| Q |
134 |
gtgaggttgagaggatgaatgctttga |
160 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
51824743 |
gtgaggttgagaagatgaatgctttga |
51824717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 51824353 - 51824290
Alignment:
| Q |
165 |
tactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
51824353 |
tactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagt |
51824290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 49208328 - 49208122
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| | |||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49208328 |
attccgagttggctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttgca |
49208229 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtcca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| |
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|
| T |
49208228 |
aggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatgacactaaggttagtcct |
49208129 |
T |
|
| Q |
232 |
tgcaaat |
238 |
Q |
| |
|
||||||| |
|
|
| T |
49208128 |
tgcaaat |
49208122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 49188315 - 49188119
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
49188315 |
attctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttgca |
49188216 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt |
228 |
Q |
| |
|
||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
49188215 |
aggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagt |
49188119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 49192051 - 49191855
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||| || |
|
|
| T |
49192051 |
attctgaattggctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagttaca |
49191952 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt |
228 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
49191951 |
aggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagt |
49191855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 49213168 - 49212964
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
|||| |||||||| || ||||| || |||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
49213168 |
attcggagttggccaaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttgca |
49213069 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtcca |
231 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
49213068 |
aggtgaggttgagaagatgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaaggttagtcca |
49212969 |
T |
|
| Q |
232 |
tgcaa |
236 |
Q |
| |
|
||||| |
|
|
| T |
49212968 |
tgcaa |
49212964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 49203157 - 49202961
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||| |||||||| || |
|
|
| T |
49203157 |
attctgagttggctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagttaca |
49203058 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt |
228 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
49203057 |
aggtgaagttgaaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaaggttagt |
49202961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 26756694 - 26756489
Alignment:
| Q |
32 |
attctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgca |
131 |
Q |
| |
|
|||| |||||| | ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26756694 |
attccgagttgactaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttgca |
26756595 |
T |
|
| Q |
132 |
gggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt---tacttagcaaagctagtgttgagtatgaaaccaaggttagt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || |||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
26756594 |
aggtgaggttgagaggatgaatgctttgactaccactgagaagcttaaacctgagttcctaattagtaaagctagtgtaca-tatgaaaccaaggttagt |
26756496 |
T |
|
| Q |
229 |
ccatgca |
235 |
Q |
| |
|
||||||| |
|
|
| T |
26756495 |
ccatgca |
26756489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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