View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_12 (Length: 899)

Name: NF1299_2D_low_12
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_12
NF1299_2D_low_12
[»] chr1 (8 HSPs)
chr1 (1-605)||(8296108-8296707)
chr1 (598-860)||(8295824-8296086)
chr1 (117-518)||(18280154-18280539)
chr1 (598-860)||(18280623-18280884)
chr1 (4-242)||(8300054-8300281)
chr1 (1-120)||(18279962-18280081)
chr1 (462-542)||(51672451-51672531)
chr1 (485-547)||(33749127-33749189)
[»] chr6 (5 HSPs)
chr6 (117-364)||(1144684-1144931)
chr6 (442-542)||(14536110-14536210)
chr6 (458-542)||(28754727-28754811)
chr6 (463-518)||(5736395-5736450)
chr6 (461-542)||(14518612-14518693)
[»] chr7 (5 HSPs)
chr7 (390-547)||(38602994-38603153)
chr7 (461-544)||(19267362-19267445)
chr7 (468-540)||(7754213-7754285)
chr7 (390-518)||(30969768-30969898)
chr7 (390-421)||(25584008-25584039)
[»] chr5 (1 HSPs)
chr5 (390-542)||(18345690-18345844)
[»] chr2 (1 HSPs)
chr2 (459-548)||(3143232-3143321)
[»] chr4 (1 HSPs)
chr4 (463-546)||(23499433-23499516)
[»] chr8 (2 HSPs)
chr8 (368-518)||(39421529-39421676)
chr8 (491-546)||(7840408-7840462)
[»] chr3 (2 HSPs)
chr3 (464-542)||(41417138-41417216)
chr3 (468-509)||(8005058-8005099)


Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 8296707 - 8296108
Alignment:
Q  1 tgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8296707 tgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtg 8296608  T
Q  101 gaatcaatggacagtttaagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttg 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8296607 gaatcaatggacagtttaagctatttccaatttcctgatgaagtttggtttttgcatatttaaaaaccaaaagagtgaactttgtctttaaatttgcttg 8296508  T
Q  201 aaactttggttttagtttcatttggttcattataacaatcaaattcttctctaacttaccaaatgagaaaaatatatgaattgttgatcctcatgtttca 300  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8296507 aaactttggttttggtttcatttagttcattataacaatcaaattcttctctaacttaccaaatgagaaaaatatatgaattgttgatcctcatgtttca 8296408  T
Q  301 taatttcaattggaagcaaccattttagaactgaagtcttctagcatgtatgtctagtatacattgcatctggctcctctaaagtgagttgagcaactca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||    
T  8296407 taatttcaattggaagcaaccattttagaactgaagtcttctagcatgtatgtctagtatacattggatctggctcctctaaag-----tgagcaactca 8296313  T
Q  401 ctttagagtgtaaagtgagtattaaaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagttacaataacaacc 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  8296312 ctttagagtgtaaagtgagtattaaaccgtcaatgaacaatttaaaggtaagtattgtaagtacataataacaaatcatgaatgagttacaataacaacc 8296213  T
Q  501 cttgattttcccactttataattaactcactttagaggatccaaatctgtatgtatatatacaattttaagttgttgaaactttaaactgaagaaaacac 600  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  8296212 cttgattttctcactttataattaactcactttagaggatccaaatttgtatgtatatatacaattttaagttgttgaaactttaaaccgaagaaaacaa 8296113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 598 - 860
Target Start/End: Complemental strand, 8296086 - 8295824
Alignment:
Q  598 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8296086 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 8295987  T
Q  698 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtgctctggtattgtctttgggcttctgttcggataatgtctg 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8295986 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtggtctggtattgtctttgggcttctgttcggataatgtctg 8295887  T
Q  798 tagcagggttctttagcaatggaatttctgtttctgaatttttctgttatgcagaatgactgg 860  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8295886 tagcagggttctttagcaatgcaatttctgtttctgaatttttctgttatgcagaatgactgg 8295824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 117 - 518
Target Start/End: Original strand, 18280154 - 18280539
Alignment:
Q  117 taagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaaactttggttttagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  18280154 taagctatttccaattgcctgatgaagtttggtttttgcatatttaaaaaccaaaagagtgaacattgtctttaaatttgcttgaaactttggttttggc 18280253  T
Q  217 ttcatttggttcattataacaatcaaattcttctctaacttaccaaatgagaaaaatatatgaattgttgatcctcatgtttcataatttcaattggaag 316  Q
    ||||||| |||||||||| ||||||||||||||||||||  ||||| ||||||||||  |||||||| ||||||||||  ||||||||||||||||||||    
T  18280254 ttcatttagttcattataccaatcaaattcttctctaacggaccaactgagaaaaatcaatgaattgatgatcctcataattcataatttcaattggaag 18280353  T
Q  317 caaccattttagaactgaagtcttctagcatgtatgtctagtatacattgcatctggctcctctaaagtgagttgagcaactcactttagagtgtaaagt 416  Q
    |||||||||||||||||||||||             | |||||||||| |  ||||||||||||||||     |||||||||||||||||||||||||||    
T  18280354 caaccattttagaactgaagtct-------------tatagtatacataggttctggctcctctaaag-----tgagcaactcactttagagtgtaaagt 18280435  T
Q  417 gagta--ttaaaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccac 514  Q
    |||||   |||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||||| |||    
T  18280436 gagtaatataaaccgtcaatgaacaaattaaaggtaaatattgtaagtacatcataacaaatcataaatatgttacaataacaacccttgattttctcac 18280535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 598 - 860
Target Start/End: Original strand, 18280623 - 18280884
Alignment:
Q  598 cactttatgacataattaaaatgaattaatatgactataatactaagtccgagccaatcatgtttttgttttcttcttctgggttatgaaaagaattagt 697  Q
    |||||||| ||||| || |||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  18280623 cactttataacatacttcaaatgaattactatgactataatactaagtcctatccaatcatgtttatgttttcttcttctgggttatgagaagaattagt 18280722  T
Q  698 ttggcctcttgtaggtgtatggtgtcttgaggcgtgttgttttacctggaggggttggtgctctggtattgtctttgggcttctgttcggataatgtctg 797  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||  ||   |    
T  18280723 ttggcctcttgtaggtgtatggtgtcttgaggcatgttgttttacttgga-gggttggtggtctggtattgtctttgggcttctgttcggatgttgatag 18280821  T
Q  798 tagcagggttctttagcaatggaatttctgtttctgaatttttctgttatgcagaatgactgg 860  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  18280822 tagcagggttctttagcaatgtaatttctgtttctgaatttttctggtatgcagaatgactgg 18280884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 8300281 - 8300054
Alignment:
Q  4 tatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtggaa 103  Q
    ||||| |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300281 tatccactgccttgctaatttcatttcctgcttttgggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtggaa 8300182  T
Q  104 tcaatggacagtttaagctatttccaattgcctgat-gaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaa 202  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||              
T  8300181 tcaatggacagtttaagctatttccaattgcctgatggaagtttggtttttgcatatttaaaaaccaaaagagtgaactttgtctttaaa---------- 8300092  T
Q  203 actttggttttagtttcatttggttcattataacaatcaa 242  Q
      ||||||||||||||||||| ||||||||||||||||||    
T  8300091 --tttggttttagtttcatttagttcattataacaatcaa 8300054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 18279962 - 18280081
Alignment:
Q  1 tgttatcctctgctttgctaatttcatgtcctgctttagggtatttgtttgaatctggagatttctcttaatgttaatgtcttccccaaatatttatgtg 100  Q
    ||||| ||||| | ||||||||||||| ||||||||| |||||||||||||||||| || |||| ||||||||||||  ||| |||||||| ||||||||    
T  18279962 tgttaacctcttccttgctaatttcatttcctgcttttgggtatttgtttgaatctagaaatttatcttaatgttaacatctgccccaaatttttatgtg 18280061  T
Q  101 gaatcaatggacagtttaag 120  Q
    |||| |||| ||| ||||||    
T  18280062 gaatgaatgcacaatttaag 18280081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 462 - 542
Target Start/End: Complemental strand, 51672531 - 51672451
Alignment:
Q  462 tacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 542  Q
    |||||||||||||||||||| |  | ||||||||||||| ||||||||| ||| ||| | |||||||||||||||||||||    
T  51672531 tacatcataacaaatcatgagtttgatacaataacaacctttgattttctcacgttacacttaactcactttagaggatcc 51672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 547
Target Start/End: Original strand, 33749127 - 33749189
Alignment:
Q  485 agttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 547  Q
    ||||| ||||||||||||||| ||||  |||||||| || | |||||||||||||||||||||    
T  33749127 agttaaaataacaacccttgagtttctgactttatactttagtcactttagaggatccaaatc 33749189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 1e-68; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 117 - 364
Target Start/End: Complemental strand, 1144931 - 1144684
Alignment:
Q  117 taagctatttccaattgcctgatgaagtttggtttttgcatttttaaaaaccaaaagagtgaactttgtctttaaatttgcttgaaactttggttttagt 216  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  ||||||||| ||||||||||||||| |||||||||||| |     
T  1144931 taagctatttccaattgcctgatgaagtttgttttttgcatatttaaaaaccaaaagtttgaactttgcctttaaatttgcttggaactttggttttggc 1144832  T
Q  217 ttcatttggttcattataacaatcaaattcttctctaacttaccaaatga-gaaaaatatatgaattgttgatcctcatgtttcataatttcaattggaa 315  Q
    |||| || |||||||  ||||||||||||||||||| ||| ||||||||| |||||||  |||||||| |||| |||||||||||| |||| |||| |||    
T  1144831 ttca-ttagttcatttgaacaatcaaattcttctctcactaaccaaatgaggaaaaatcaatgaattgatgattctcatgtttcatcattttaattagaa 1144733  T
Q  316 gcaaccattttagaactgaagtcttctagcatgtatgtctagtatacat 364  Q
    | ||||||||||||||||||||||||||||| |||| | |||| |||||    
T  1144732 ggaaccattttagaactgaagtcttctagcacgtatatatagtctacat 1144684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 442 - 542
Target Start/End: Complemental strand, 14536210 - 14536110
Alignment:
Q  442 ttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatc 541  Q
    |||||||||  ||| ||| |||||||||||||||||| || |  ||| ||||||||||| ||||||||| ||||||| | || |||| ||||||||||||    
T  14536210 ttaaaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttctcactttacacttcactcgctttagaggatc 14536111  T
Q  542 c 542  Q
    |    
T  14536110 c 14536110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 542
Target Start/End: Complemental strand, 28754811 - 28754727
Alignment:
Q  458 taagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 542  Q
    ||||||||| |||||||||||||  || |||||||||||| || ||||||||  |  |||||| || ||||| ||||||||||||    
T  28754811 taagtacattataacaaatcatgggtgtgttacaataacatcctttgattttatcggtttatattttactcaatttagaggatcc 28754727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 518
Target Start/End: Complemental strand, 5736450 - 5736395
Alignment:
Q  463 acatcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 518  Q
    ||||||||||||||||| |||   |||||||||||||| ||||||||| |||||||    
T  5736450 acatcataacaaatcattaatttcttacaataacaaccattgattttctcacttta 5736395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 542
Target Start/End: Complemental strand, 14518693 - 14518612
Alignment:
Q  461 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 542  Q
    ||||||||||||||||||||| |   ||| ||||||||  |||||||||| ||||||| | || | ||||||||||| ||||    
T  14518693 gtacatcataacaaatcatgagtttcttataataacaattcttgattttctcactttacactttattcactttagagaatcc 14518612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 390 - 547
Target Start/End: Complemental strand, 38603153 - 38602994
Alignment:
Q  390 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 487  Q
    ||||||||||||||||||||||||||||| || ||  |||| | ||| || || | |||||||  ||| ||| |||||| |||||||||||||| |  ||    
T  38603153 tgagcaactcactttagagtgtaaagtgaataatatcaaccgttaattaaaaaatcaaaggtagatattgtaggtacattataacaaatcatgagtttgt 38603054  T
Q  488 tacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatc 547  Q
    || ||||||||||||||||||||   ||||| | || |||||||||||||||||||||||    
T  38603053 taaaataacaacccttgattttcttgctttacacttcactcactttagaggatccaaatc 38602994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 461 - 544
Target Start/End: Original strand, 19267362 - 19267445
Alignment:
Q  461 gtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaa 544  Q
    ||||||||||||||||||||| |  |||| |||||||||||||||||||| || |||| | || ||||||||||||||||||||    
T  19267362 gtacatcataacaaatcatgagtttgttaaaataacaacccttgattttctcaatttacactttactcactttagaggatccaa 19267445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 468 - 540
Target Start/End: Original strand, 7754213 - 7754285
Alignment:
Q  468 ataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggat 540  Q
    |||| |||||| || || ||||||||||||||||||||||||| || |||| | |||||||||||||||||||    
T  7754213 ataataaatcacgagtgtgttacaataacaacccttgattttctcattttacacttaactcactttagaggat 7754285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 518
Target Start/End: Complemental strand, 30969898 - 30969768
Alignment:
Q  390 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 487  Q
    ||||||||| |||||||||||||||||| | | ||  |||| | ||| ||||| |||| |||   | | ||| ||| ||||||||||||||||| |  ||    
T  30969898 tgagcaactaactttagagtgtaaagtgcgcaatatcaaccgttaattaacaaattaagggttgattttgtaggtatatcataacaaatcatgagtttgt 30969799  T
Q  488 tacaataacaacccttgattttcccacttta 518  Q
    ||||||||||||||||||||||| |||||||    
T  30969798 tacaataacaacccttgattttctcacttta 30969768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 421
Target Start/End: Original strand, 25584008 - 25584039
Alignment:
Q  390 tgagcaactcactttagagtgtaaagtgagta 421  Q
    ||||||||||||||||||||||||||||||||    
T  25584008 tgagcaactcactttagagtgtaaagtgagta 25584039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 542
Target Start/End: Complemental strand, 18345844 - 18345690
Alignment:
Q  390 tgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtacatcataacaaatcatgaatgagt 487  Q
    ||||||| |||||||||||||||||||| | | ||  |||| | ||| || || | ||| |||  ||| ||| |||| |||||||||||||||| |  ||    
T  18345844 tgagcaattcactttagagtgtaaagtgggcaatatcaaccgttaattaataaatgaaaagtatatattgtaggtacgtcataacaaatcatgagtttgt 18345745  T
Q  488 tacaataacaacccttgattttcccactttataattaactcactttagaggatcc 542  Q
    | |||||||||||||||||||||  |||||||| || |||||||||||| |||||    
T  18345744 tgcaataacaacccttgattttcgtactttatactttactcactttagacgatcc 18345690  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 548
Target Start/End: Original strand, 3143232 - 3143321
Alignment:
Q  459 aagtacatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaatct 548  Q
    ||||| |||||||||||||| || |  |||| ||||||||| |||||| ||| ||||||| || | | ||||||||||||||||||||||    
T  3143232 aagtatatcataacaaatcaggagtttgttaaaataacaacacttgatattctcactttacaaattagtcactttagaggatccaaatct 3143321  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 463 - 546
Target Start/End: Original strand, 23499433 - 23499516
Alignment:
Q  463 acatcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatccaaat 546  Q
    ||||||||||||||||||| |  |||| ||||||||||||| |||||| ||||||| | || |  ||||||| |||||||||||    
T  23499433 acatcataacaaatcatgagtttgttaaaataacaacccttaattttctcactttacacttcagccactttaaaggatccaaat 23499516  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 518
Target Start/End: Complemental strand, 39421676 - 39421529
Alignment:
Q  368 atctggctcctctaaagtgagttgagcaactcactttagagtgtaaagtgagtatta--aaccatcaatgaacaatttaaaggtaagtatagtaagtaca 465  Q
    |||||||||||||||||||||     |||  ||||||| ||| ||||||||||| ||  ||||||  || ||||| | |||||||  |||   |||||||    
T  39421676 atctggctcctctaaagtgag-----caatccactttaaagtataaagtgagtaatatcaaccattgattaacaaatcaaaggtagatattagaagtaca 39421582  T
Q  466 tcataacaaatcatgaatgagttacaataacaacccttgattttcccacttta 518  Q
     ||||||||||||||| |  |||| |||||||||| ||||||||| |||||||    
T  39421581 ccataacaaatcatgagtttgttaaaataacaacctttgattttctcacttta 39421529  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 7840408 - 7840462
Alignment:
Q  491 aataacaacccttgattttcccactttataattaactcactttagaggatccaaat 546  Q
    ||||||||||||||||||||  |||||| | |||||||||||||||||| ||||||    
T  7840408 aataacaacccttgattttct-actttacacttaactcactttagaggagccaaat 7840462  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 464 - 542
Target Start/End: Complemental strand, 41417216 - 41417138
Alignment:
Q  464 catcataacaaatcatgaatgagttacaataacaacccttgattttcccactttataattaactcactttagaggatcc 542  Q
    ||||||| ||||||| || |  |||||||||||||||||||||||||  |||||| | ||  ||| |||||||||||||    
T  41417216 catcatagcaaatcacgagtttgttacaataacaacccttgattttcttactttacacttttctcgctttagaggatcc 41417138  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 509
Target Start/End: Original strand, 8005058 - 8005099
Alignment:
Q  468 ataacaaatcatgaatgagttacaataacaacccttgatttt 509  Q
    ||||||||||||||||  |||||||||||||||||| |||||    
T  8005058 ataacaaatcatgaatttgttacaataacaacccttaatttt 8005099  T

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