View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_139 (Length: 224)
Name: NF1299_2D_low_139
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_139 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 6445647 - 6445458
Alignment:
| Q |
13 |
acatatatcattgttgatttattttannnnnnnnattgagttcgattaacattgtgacttgccaagattcccaagaacatgtttgcatttgccattatct |
112 |
Q |
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| T |
6445647 |
acatatatcattgttgatttattttattttt---attgagttcgattaacattgtgacttgccaagatacccaagaacatgtttgcatttgccattatct |
6445551 |
T |
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| Q |
113 |
attgcaaataatacctttctggttcacagatccttagaaattcaacggaactaaatcatcatggtctgactagctcacctactgctgctgaca |
205 |
Q |
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| T |
6445550 |
attgcaaataatacccttctaggtcacagatccttagaaattcaacggaactaaatcatcatggtctgactaactcacctactgctgctgaca |
6445458 |
T |
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