View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_19 (Length: 716)
Name: NF1299_2D_low_19
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 13 - 699
Target Start/End: Complemental strand, 43100182 - 43099499
Alignment:
| Q |
13 |
ctgatatgaaaccaggaattatcaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaatatatgagatcaccctataatttgaatt |
112 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43100182 |
ctgacatgaaaccaggaattattaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaatatatgagatcaccctataatttgaatt |
43100083 |
T |
|
| Q |
113 |
aatgattaaaatttttagatataagatttttggtgttgatatatttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatga |
212 |
Q |
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| T |
43100082 |
aatgattaaaatttttagatataagatttttggtgtttatatatttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatga |
43099983 |
T |
|
| Q |
213 |
aatagacactgaattctttggtaccacgcaaaataagcctaatgcttcgatgtcaaatgtgtgctctagactcttaaattaatcaattacctcatttcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43099982 |
aatagacactgaattctttggtaccacgcaaaataagcctaatgcttcgatgtcaaatgtgtgcactagactcttaaattaatcaattacctcatttcat |
43099883 |
T |
|
| Q |
313 |
cagtcactaaaatccattttgctatgacaaacaaatattgttcaattacaatacttcatccctacatactacatggacaagtcaatgaattagatttaaa |
412 |
Q |
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| T |
43099882 |
cagtcactaaaatccattttgctatgacaaacaaatattgttcaattacaatacttcatccctacatactacatggacaagtcaatgaattagatttaaa |
43099783 |
T |
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| Q |
413 |
atcctatgcacatgcaaaagtactgtttccttgatcaagttctttagtctaatgctattaaaaaatgctataatatacatcaaatgtaaatattttgata |
512 |
Q |
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| T |
43099782 |
atcctatgcacatgcaaa---actgtttccttgatcaagttctttagtctaatgctattaaaaaatgctataatatacatcaaatgtaaatattttgata |
43099686 |
T |
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| Q |
513 |
ggaactttgatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtacttttaccaacattcatagaattaacaactagactacaccatg |
612 |
Q |
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| T |
43099685 |
ggaacttagatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtacttttaccaacattcatagaattaacaaccagactacaccatg |
43099586 |
T |
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| Q |
613 |
caacagaataaaaagaacatatgaattggtatttttaggctgagtgaaggtatatgatataactcccaaaaaattatttcatgaaaa |
699 |
Q |
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| T |
43099585 |
caacagaataaaaagaacatatgaattggtatttttaggctgagtgaaggtatatgatataactcccaaaaaaaattttcatgaaaa |
43099499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 575
Target Start/End: Complemental strand, 48446739 - 48446679
Alignment:
| Q |
515 |
aactttgatttctttcaaatttcaagcaatcagttaaaactcaaaatatatcgtactttta |
575 |
Q |
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| T |
48446739 |
aacttggatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagtttta |
48446679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 525
Target Start/End: Original strand, 2849434 - 2849472
Alignment:
| Q |
487 |
atacatcaaatgtaaatattttgataggaactttgattt |
525 |
Q |
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| T |
2849434 |
atacatcaaatgttaatattttgataggaacttggattt |
2849472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 40870951 - 40871065
Alignment:
| Q |
139 |
tttttggtgttgatat--atttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatgaaatagacactgaattctttggtac |
236 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||| |||| | ||||| ||| ||||||||||||| ||| ||| ||||||| |
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| T |
40870951 |
tttttggtgttgatattaatttcatttgggaattgtagctttcaaacatagaagatcacaaaggaacccatgatgaaatagacattgagttccttggtac |
40871050 |
T |
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| Q |
237 |
cacgcaaaataagcc |
251 |
Q |
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| T |
40871051 |
tacacaagataagcc |
40871065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 40870379 - 40870425
Alignment:
| Q |
38 |
caatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
84 |
Q |
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| T |
40870379 |
caatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
40870425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 566
Target Start/End: Original strand, 38489722 - 38489767
Alignment:
| Q |
521 |
gatttctttcaaatttcaagcaatcagttaaaactcaaaatatatc |
566 |
Q |
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| T |
38489722 |
gatttcattcaagtttcaagcaatcaattaaaactcaaaatatatc |
38489767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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