View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_26 (Length: 642)
Name: NF1299_2D_low_26
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 43257100 - 43257744
Alignment:
| Q |
1 |
tgcaccacctttctgaacaccaaaaagagaaaagaaagttatttttagtataaacatagttcaaagcacatgcat------------ggcgttagttcag |
88 |
Q |
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| T |
43257100 |
tgcaccacctttctgaacaccaaaaagagaaaagaaagttatttttagtataaacatagttcagagcacatgcatacttgtcaaagaggcgttagttcag |
43257199 |
T |
|
| Q |
89 |
tggttagagttgactttgtaacctcaagagacataaaattaaacgaatcggttgtaatatggtcatctgagacactattattaataaaaagcaaacata- |
187 |
Q |
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| T |
43257200 |
tggttagagttgactttgtaacctcaagagacatagaaa-----gaatcggttgtaatatggtcatctgagacactattattaataaaaagcaaacatat |
43257294 |
T |
|
| Q |
188 |
-attaagaaaaatttgagtgagagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgat |
286 |
Q |
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| T |
43257295 |
aattaagaaaaatttgagtgagagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaattgaagatgggagtgat |
43257394 |
T |
|
| Q |
287 |
cttgctccaaaactatgtcttacagcttcagctgcaaaagtatgagatgatgacgacaatagaatttgtgtagccatgtttttctcttctttgttgcctc |
386 |
Q |
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| T |
43257395 |
cttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaatagaacttgtgtagccatgtttttcccttctttgttgcctc |
43257494 |
T |
|
| Q |
387 |
taggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagataaatggaggaagatatgaagaactctaagtcactactttca |
486 |
Q |
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| T |
43257495 |
taggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagataaatggaggaagatatgaagaactctaagtcactactttca |
43257594 |
T |
|
| Q |
487 |
agtttgtgcatgcaagcaacgtggaagttcttgtggaagactgcatgtgatgatgatgtcaaataaagttaatttcaccct-------cagtgaaatatt |
579 |
Q |
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| T |
43257595 |
agtttgtgcatgcaagcaacgtggaagttcttgtggaagactgcatgtgatgatgatgtcaaataaagttaatttcacccttgacacacagtgaaatatt |
43257694 |
T |
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| Q |
580 |
ttcatctataatagattatactcttataaagatagtgatagtttcatctc |
629 |
Q |
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| T |
43257695 |
ttcatctataatagattatactcttataaagatagtgatagtttcatctc |
43257744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 43260713 - 43261150
Alignment:
| Q |
13 |
ctgaacaccaaaaagagaaaagaaagttatttttagtataaacatagttcaaagcacat---gcatggc--------gttagttcagtggttagagttga |
101 |
Q |
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| T |
43260713 |
ctgaacaccaaaaagagaaaagaaagttattttaa-tataaacatagctcaaagcacataatgcttgtccaagaggtgtcagttcagtggttagagttga |
43260811 |
T |
|
| Q |
102 |
ctttgtaacctcaagagacataaaattaaacgaatcggttgtaatatggtcatctgagacactattattaat-aaaaagcaaacataa--ttaagaaaaa |
198 |
Q |
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| T |
43260812 |
ctttgtaacttcaagagacaga---------------gttgtaatatgatcatcagagacactattattaatgaaaaagcaaacatatatttaaggaaaa |
43260896 |
T |
|
| Q |
199 |
tttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgatcttgct |
292 |
Q |
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| T |
43260897 |
attgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgct |
43260996 |
T |
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| Q |
293 |
ccaaaactatgtcttacagcttcagctgcaaaagtatgagatgatgacgacaatagaatttgtgtagccatgtttttctcttctttgttgcctctaggaa |
392 |
Q |
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| T |
43260997 |
ccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgtagccatgtttttccctcctttgttgcctctaggaa |
43261096 |
T |
|
| Q |
393 |
caagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagata |
446 |
Q |
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| T |
43261097 |
caagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagata |
43261150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 474
Target Start/End: Original strand, 43261169 - 43261197
Alignment:
| Q |
446 |
aaatggaggaagatatgaagaactctaag |
474 |
Q |
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| T |
43261169 |
aaatggaggaagatatgaagaactctaag |
43261197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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