View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_30 (Length: 548)
Name: NF1299_2D_low_30
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 269 - 535
Target Start/End: Complemental strand, 6710990 - 6710723
Alignment:
| Q |
269 |
aattcatctcacaacagctgataatcaa-tcaaactcatgaactaaaactctaaaattttcaatcatcacaatttaataaattattagcacaccctagag |
367 |
Q |
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| T |
6710990 |
aattcatctcacaacagctgataatcaaatcaaactcatgaactaaaactctaaaattttcaatcatcacaatttaataaattattagcacaccctagag |
6710891 |
T |
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| Q |
368 |
agattttgaggaggttattatatgttacctcaatggatattatacctaaagcctagtttcttcttctttctcccaaattgaaaccttagcctccattcca |
467 |
Q |
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| T |
6710890 |
agattttgaggaggttattatatgttacctcaatggatattatacataaagcctagtttcttcttctttctcccaaattgaaaccttagcctccattcca |
6710791 |
T |
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| Q |
468 |
ataagttgttccttcttccttctcccgttatttctctctcaagccatttttgtctctttattcatctc |
535 |
Q |
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| T |
6710790 |
ataagttgtttcttcttccttctcccgttatttctctctcaagccatttttgtctctttattcttctc |
6710723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 6711520 - 6711273
Alignment:
| Q |
18 |
ataacatctatcaattaaagtcatgaacgatatatgaaattaagtcaaacaattatgtagattttacttgggataggcagcccnnnnnnnnngataatgc |
117 |
Q |
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| T |
6711520 |
ataacatctatcaattaaagtcatgaacgatatatgaaattaagtcaaacaattatgtagattttacttgggataggcagcccaaaaaaaa--aaaatgc |
6711423 |
T |
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| Q |
118 |
aattggtctcatatcaaaatttaaactaattaattcaggaaaaattgtacattcaagttgattaatagaaactataaaaggacactcatatgaaatatga |
217 |
Q |
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| T |
6711422 |
aattggtctcatatcaaaatttaaactaattaattcaggaaaaattgtacattcaagttgattaatagaaactataaaaggacactcatatgaaatatga |
6711323 |
T |
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| Q |
218 |
aaattttctaaattttattgaaggttgctagattaaatatgaacaccatgcaatt |
272 |
Q |
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| T |
6711322 |
aaactttctaaattttattgaag-----ttgattaaatatgaacaccatgcaatt |
6711273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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