View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_35 (Length: 530)

Name: NF1299_2D_low_35
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_35
NF1299_2D_low_35
[»] chr3 (3 HSPs)
chr3 (113-522)||(45893044-45893453)
chr3 (247-480)||(12980350-12980581)
chr3 (23-52)||(45892954-45892983)


Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 113 - 522
Target Start/End: Original strand, 45893044 - 45893453
Alignment:
Q  113 tcatcattgtcaaattttacagtaggagaaaattaatgcaaaaaacccccactgtaattcctattgatcttagtattctccaatgaactaatgtgtacta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893044 tcatcattgtcaaattttacagtaggagaaaattaatgcaaaaaacccccactgtaattcctattgatcttagtattctccaatgaactaatgtgtacta 45893143  T
Q  213 attcctattaatcttagtactactatatgactgcaccatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893144 attcctattaatcttagtactactatatgactgcaccatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaa 45893243  T
Q  313 acatagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccactt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893244 acatagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccactt 45893343  T
Q  413 gaagcttgggtctaaaatttatattacaagtcaccaattataatttagaacatgtatttgatcattaacaaaattttaaaaatcaaatgattataatttc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893344 gaagcttgggtctaaaatttatattacaagtcaccaattataatttagaacatgtatttgatcattaacaaaattttaaaaatcaaatgattataatttc 45893443  T
Q  513 atctcagtcg 522  Q
    |||| |||||    
T  45893444 atctaagtcg 45893453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 247 - 480
Target Start/End: Complemental strand, 12980581 - 12980350
Alignment:
Q  247 accatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaaacatagcaattgcaagaaaaaatactggaccgat 346  Q
    ||||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||| ||    
T  12980581 accatacctggcgaagtttaagctctttctctgtcaccaatgaactcatctgaagaacgaaattaaacatagcagttgcaagaaaaaatgttggacccat 12980482  T
Q  347 tgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccacttgaagcttgggtctaaaatttatatta-caagtca 445  Q
    ||||||||| | ||||  ||||   ||  |||||||||  |||||||| |||||||||||||||||||||| ||||||| |||   | || | |||| ||    
T  12980481 tgatccaactgtagagaaaggagcaattcctgggtgcgggaattccttgaaaaacacattccacttgaagcctgggtctgaaa---aaatcatcaagcca 12980385  T
Q  446 ccaattataatttagaacatgtatttgatcattaa 480  Q
     |||||| ||||||||||||| |||| ||||||||    
T  12980384 tcaattagaatttagaacatggatttcatcattaa 12980350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 45892954 - 45892983
Alignment:
Q  23 gtaaagccccatcactgtcattgcctatcg 52  Q
    ||||||||||||||||||||||||||||||    
T  45892954 gtaaagccccatcactgtcattgcctatcg 45892983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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