View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_36 (Length: 530)
Name: NF1299_2D_low_36
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 113 - 522
Target Start/End: Original strand, 45893044 - 45893453
Alignment:
| Q |
113 |
tcatcattgtcaaattttacagtaggagaaaattaatgcaaaaaacccccactgtaattcctattgatcttagtattctccaatgaactaatgtgtacta |
212 |
Q |
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| T |
45893044 |
tcatcattgtcaaattttacagtaggagaaaattaatgcaaaaaacccccactgtaattcctattgatcttagtattctccaatgaactaatgtgtacta |
45893143 |
T |
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| Q |
213 |
attcctattaatcttagtactactatatgactgcaccatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaa |
312 |
Q |
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| T |
45893144 |
attcctattaatcttagtactactatatgactgcaccatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaa |
45893243 |
T |
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| Q |
313 |
acatagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccactt |
412 |
Q |
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| T |
45893244 |
acatagcaattgcaagaaaaaatactggaccgattgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccactt |
45893343 |
T |
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| Q |
413 |
gaagcttgggtctaaaatttatattacaagtcaccaattataatttagaacatgtatttgatcattaacaaaattttaaaaatcaaatgattataatttc |
512 |
Q |
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| T |
45893344 |
gaagcttgggtctaaaatttatattacaagtcaccaattataatttagaacatgtatttgatcattaacaaaattttaaaaatcaaatgattataatttc |
45893443 |
T |
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| Q |
513 |
atctcagtcg |
522 |
Q |
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| T |
45893444 |
atctaagtcg |
45893453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 247 - 480
Target Start/End: Complemental strand, 12980581 - 12980350
Alignment:
| Q |
247 |
accatacctggcgaagtttgagctctttctctgcgaccaaagaactcatctgaagaacaaaattaaacatagcaattgcaagaaaaaatactggaccgat |
346 |
Q |
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| T |
12980581 |
accatacctggcgaagtttaagctctttctctgtcaccaatgaactcatctgaagaacgaaattaaacatagcagttgcaagaaaaaatgttggacccat |
12980482 |
T |
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| Q |
347 |
tgatccaacagcagagggaggactcatggctgggtgcgcaaattccttcaaaaacacattccacttgaagcttgggtctaaaatttatatta-caagtca |
445 |
Q |
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| T |
12980481 |
tgatccaactgtagagaaaggagcaattcctgggtgcgggaattccttgaaaaacacattccacttgaagcctgggtctgaaa---aaatcatcaagcca |
12980385 |
T |
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| Q |
446 |
ccaattataatttagaacatgtatttgatcattaa |
480 |
Q |
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| T |
12980384 |
tcaattagaatttagaacatggatttcatcattaa |
12980350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 45892954 - 45892983
Alignment:
| Q |
23 |
gtaaagccccatcactgtcattgcctatcg |
52 |
Q |
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| T |
45892954 |
gtaaagccccatcactgtcattgcctatcg |
45892983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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