View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1299_2D_low_37 (Length: 514)

Name: NF1299_2D_low_37
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1299_2D_low_37
NF1299_2D_low_37
[»] chr8 (5 HSPs)
chr8 (3-461)||(31903727-31904185)
chr8 (4-158)||(29273926-29274080)
chr8 (142-257)||(12588461-12588576)
chr8 (211-257)||(14794655-14794701)
chr8 (211-257)||(14801925-14801971)
[»] chr6 (60 HSPs)
chr6 (46-230)||(27677698-27677882)
chr6 (4-233)||(28234441-28234670)
chr6 (46-182)||(27706534-27706670)
chr6 (58-245)||(29825958-29826145)
chr6 (46-158)||(31284207-31284319)
chr6 (3-186)||(26802318-26802501)
chr6 (46-245)||(26949580-26949779)
chr6 (46-159)||(26622895-26623008)
chr6 (46-159)||(26728873-26728986)
chr6 (4-181)||(26893604-26893781)
chr6 (46-182)||(27593152-27593288)
chr6 (46-230)||(27678865-27679049)
chr6 (46-158)||(27698650-27698762)
chr6 (46-158)||(27725001-27725113)
chr6 (4-158)||(27611158-27611312)
chr6 (4-158)||(28786155-28786309)
chr6 (4-158)||(28792276-28792430)
chr6 (5-158)||(27718535-27718688)
chr6 (46-158)||(27531353-27531465)
chr6 (46-245)||(25071578-25071777)
chr6 (46-233)||(28242723-28242910)
chr6 (20-182)||(27338197-27338359)
chr6 (20-182)||(27398937-27399099)
chr6 (46-159)||(27604860-27604973)
chr6 (46-158)||(27229151-27229263)
chr6 (46-158)||(28781058-28781170)
chr6 (46-245)||(26861535-26861734)
chr6 (3-233)||(28226826-28227056)
chr6 (135-257)||(29679599-29679721)
chr6 (4-233)||(28180991-28181220)
chr6 (4-233)||(28185243-28185472)
chr6 (46-186)||(26884082-26884222)
chr6 (46-229)||(26959084-26959268)
chr6 (169-245)||(27665186-27665262)
chr6 (46-245)||(26635609-26635808)
chr6 (7-158)||(26646359-26646510)
chr6 (46-245)||(26741575-26741774)
chr6 (7-158)||(26752327-26752478)
chr6 (46-116)||(27214336-27214406)
chr6 (46-116)||(27234822-27234892)
chr6 (3-117)||(28098566-28098680)
chr6 (109-243)||(29793589-29793723)
chr6 (4-245)||(28325358-28325599)
chr6 (181-245)||(26617373-26617437)
chr6 (181-245)||(26723301-26723365)
chr6 (140-243)||(28481165-28481268)
chr6 (60-182)||(25579652-25579774)
chr6 (142-243)||(29697398-29697499)
chr6 (4-116)||(26342132-26342244)
chr6 (22-158)||(26655884-26656020)
chr6 (22-158)||(26761855-26761991)
chr6 (142-257)||(29761126-29761241)
chr6 (295-329)||(9169437-9169471)
chr6 (60-182)||(25481675-25481797)
chr6 (46-116)||(27665315-27665385)
chr6 (109-243)||(29733119-29733253)
chr6 (295-329)||(33288154-33288188)
chr6 (61-182)||(26142799-26142920)
chr6 (97-158)||(29467797-29467858)
chr6 (16-116)||(28139430-28139530)
[»] scaffold0038 (4 HSPs)
scaffold0038 (4-233)||(34602-34831)
scaffold0038 (46-233)||(42885-43072)
scaffold0038 (3-233)||(27324-27554)
scaffold0038 (4-245)||(116673-116914)
[»] scaffold0019 (1 HSPs)
scaffold0019 (4-233)||(58363-58592)
[»] scaffold0349 (2 HSPs)
scaffold0349 (46-158)||(3578-3690)
scaffold0349 (46-158)||(14511-14623)
[»] scaffold0277 (2 HSPs)
scaffold0277 (4-155)||(4830-4981)
scaffold0277 (46-158)||(13788-13900)
[»] chr3 (1 HSPs)
chr3 (142-257)||(613196-613311)
[»] chr4 (6 HSPs)
chr4 (46-245)||(5091023-5091222)
chr4 (46-116)||(18655662-18655732)
chr4 (46-116)||(18699585-18699655)
chr4 (46-158)||(18724228-18724340)
chr4 (46-158)||(18731647-18731759)
chr4 (46-158)||(18679710-18679822)
[»] chr1 (2 HSPs)
chr1 (25-158)||(268500-268633)
chr1 (4-186)||(28127794-28127977)
[»] scaffold1254 (1 HSPs)
scaffold1254 (46-158)||(73-185)
[»] scaffold0419 (1 HSPs)
scaffold0419 (46-158)||(7444-7556)
[»] chr2 (3 HSPs)
chr2 (49-245)||(17993753-17993949)
chr2 (145-260)||(17698772-17698887)
chr2 (295-329)||(17438156-17438190)
[»] scaffold0012 (2 HSPs)
scaffold0012 (140-257)||(214391-214508)
scaffold0012 (142-257)||(241738-241853)
[»] chr5 (1 HSPs)
chr5 (60-245)||(16688944-16689129)


Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 3 - 461
Target Start/End: Original strand, 31903727 - 31904185
Alignment:
Q  3 ttatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatc 102  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||| |||||||||    
T  31903727 ttatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatc 31903826  T
Q  103 cacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctct 202  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31903827 cacacctttattgacgatgaagaacttcaaagaggacatgaaatcacaccatcacttttagaggcaattgaagagtctaggattgccattattgtgctct 31903926  T
Q  203 ctaagaactatgcttcttcttcattttgcttacatgaacttgtaaagatccttgactgcattaagggaaaaggtaggttggtttggccaatcttctatga 302  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31903927 ctaaaaactatgcttcttcttcattttgcttacatgaacttgtcaagatccttgactgcattaagggaaaaggtaggttggtttggccaatcttttatga 31904026  T
Q  303 tgttgatccttctgatgtgcgaaagcagacgggatcatacagtgaagctttatctatgcttgcagaaagattcaatgataataacttgcaaatatggaag 402  Q
    ||||||||||||||||||| | |||||||| ||||| ||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  31904027 tgttgatccttctgatgtgaggaagcagacaggatcttacggtgaagctttagctatgcttggagagagattcaatgataataacttgcaaatatggaag 31904126  T
Q  403 aatgctttgcaacaagttgctaacttgtctggatggcatttcaaaattgggtaaatacc 461  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  31904127 aatgctttgcaacaagtagctaacttgtctggatggcatttcaaaattgggtaactacc 31904185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 29274080 - 29273926
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  ||| | || ||||||||||||||||||   ||||||||  |||||||||  ||  ||||||||||  ||||   ||||||||||||||    
T  29274080 tatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttttattggccatctctacaagactcttactgacaagggaatcc 29273981  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    ||||||||||||| |||    |||||||||||||| ||||||||| | |||||||    
T  29273980 acaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcact 29273926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 12588461 - 12588576
Alignment:
Q  142 gaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaac 241  Q
    |||||||||||||||||| |  | ||||||||||| || |  || |||||  |||| ||||||||||| ||||||||||| || ||||||||||| || |    
T  12588461 gaaatcacaccatcacttctcaaagcaattgaagactccaagatggccatcgttgtcctctctaagaattatgcttcttcctccttttgcttacaagagc 12588560  T
Q  242 ttgtaaagatccttga 257  Q
    ||  ||||||||||||    
T  12588561 tttcaaagatccttga 12588576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 14794655 - 14794701
Alignment:
Q  211 tatgcttcttcttcattttgcttacatgaacttgtaaagatccttga 257  Q
    ||||| |||||||||||||||||| | |||||||| |||||||||||    
T  14794655 tatgcatcttcttcattttgcttagacgaacttgtgaagatccttga 14794701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 14801925 - 14801971
Alignment:
Q  211 tatgcttcttcttcattttgcttacatgaacttgtaaagatccttga 257  Q
    ||||| |||||||||||||||||| | |||||||| |||||||||||    
T  14801925 tatgcatcttcttcattttgcttagacgaacttgtgaagatccttga 14801971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 60)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 27677882 - 27677698
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| |||||||| ||||| ||||||||||| |||||   |||||||||||||||||||||||||||| || |  |||||||||||||| ||||||    
T  27677882 gacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaa 27677783  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttg 230  Q
    |||||||||||||| |  |||| |||||||||||||| |||   |||  |||| | ||||  |||||||| ||||||||||||||    
T  27677782 tcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttg 27677698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 28234441 - 28234670
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||| || |||||||| |  ||||||||    |||||||| || |||||||||| ||||||||| | |||||| ||| ||||||||||||    
T  28234441 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 28234540  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
    ||||||||||||| ||     | |||||| ||||  ||||||| ||||||||||||||  |||| |||||||||||||| |||  ||||  |||  | ||    
T  28234541 acaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtc 28234640  T
Q  204 taagaactatgcttcttcttcattttgctt 233  Q
    ||  || |||||||||||||||||||||||    
T  28234641 tatcaattatgcttcttcttcattttgctt 28234670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 27706670 - 27706534
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| |||||||| || || ||||||||||| ||| |   |||||||||||||||||||||||||||| || |  ||||||||||| || ||||||    
T  27706670 gacactcggtacggtttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaa 27706571  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctag 182  Q
    |||||||||||||| |  |||| ||||||||||||||    
T  27706570 tcacaccatcacttctcaaggccattgaagagtctag 27706534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 29825958 - 29826145
Alignment:
Q  58 ggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcac 157  Q
    ||||||||||| ||||||||||||||||||  |||||||  ||| | |||||||||||| ||  || | |||||||||||| | ||||||||||| ||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcacaccctcac 29826057  T
Q  158 ttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    || |  |||||||| |||| ||||| || ||||||  | |  ||||||  || |||||||||||||| ||||||||| ||||||||||    
T  29826058 ttgtgaaggcaattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgttttgcttagatgaacttgt 29826145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 31284207 - 31284319
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| || ||||| ||||| ||||||||||| |||||   ||||||||||||||||||||||||||| |||    |||||||||||||| ||||||    
T  31284207 gacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatgaaa 31284306  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  31284307 tcacaccatcact 31284319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 26802318 - 26802501
Alignment:
Q  3 ttatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatc 102  Q
    |||||||||||  ||| | ||||||||||  ||||| |||   |||||||| ||||||||||| || ||||||||||| |||||   |||||||||||||    
T  26802318 ttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatc 26802417  T
Q  103 cacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaatt 186  Q
    || ||||||||||| ||  |  | |||||||||||  |||||||||||||||||||  |  |||| |||||||| |||||||||    
T  26802418 cataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatt 26802501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 26949580 - 26949779
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||||| |||||| ||||| |||||||| |||||||| | ||||||||||||||  ||||||||||| ||| |  | ||||| | |||  | ||||    
T  26949580 gacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaa 26949679  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||||||| |||||  |  ||  ||||||||| || |||||||||||||| ||  | |||||| | |||||||||||||||||||| ||| | ||||||||    
T  26949680 tcacaccttcactcctcaagagaattgaagaatcgagaattgccattatcgtcttttctaaggaatatgcttcttcttcattttgtttagacgaacttgt 26949779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 26622895 - 26623008
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| |||||||| || |||||||||||||| |||||   ||||||||||||||||||||||||||| |||    |||||||||||||| | ||||    
T  26622895 gacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaa 26622994  T
Q  146 tcacaccatcactt 159  Q
    ||| ||||||||||    
T  26622995 tcaaaccatcactt 26623008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 26728873 - 26728986
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| |||||||| || |||||||||||||| |||||   ||||||||||||||||||||||||||| |||    |||||||||||||| | ||||    
T  26728873 gacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaa 26728972  T
Q  146 tcacaccatcactt 159  Q
    ||| ||||||||||    
T  26728973 tcaaaccatcactt 26728986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 26893781 - 26893604
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||||||||| |||||||| ||||||||||  |||||||| |  |||||||| ||  |||| || |||||||| ||||| |  ||||| |    
T  26893781 tatggattcacctacgatgtcttcctcaattttagaggctctgacactcgttttggttttacgggtcatctttataaagctctttgtgatagtggaattc 26893682  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtcta 181  Q
    ||||||||||||| |||  | | ||||| |||||  | |||||| ||||||||||| |  ||||||||||||||||||    
T  26893681 acaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaagagtcta 26893604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 27593288 - 27593152
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| |||||||| ||||| ||||||||||| |||||   ||||||||||||| ||||||||||||| ||  |    |||||||||||  ||||||    
T  27593288 gacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaa 27593189  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctag 182  Q
    |||||||||||||| |  |||| ||||||||||||||    
T  27593188 tcacaccatcacttctcaaggccattgaagagtctag 27593152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 27678865 - 27679049
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| |||||||| ||||| ||||||||||| |||||   ||||||||||||| |||||||||||||  |  |    |||||||||||  ||||||    
T  27678865 gacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaa 27678964  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttg 230  Q
    |||||||||||||| |  |||| |||||||||||||| |||   |||  |||| | ||||  |||||||| ||||||||||||||    
T  27678965 tcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttg 27679049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 27698762 - 27698650
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||| ||  |  | |||||||||||  ||||||    
T  27698762 gacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 27698663  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  27698662 tcacaccatcact 27698650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 27725113 - 27725001
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||| ||  |  | |||||||||||  ||||||    
T  27725113 gacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 27725014  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  27725013 tcacaccatcact 27725001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 27611312 - 27611158
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  ||| | ||||||||||  ||||| |||   ||||||||  ||||||||||||||||||||||||| |||||   ||||||||||||||    
T  27611312 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcc 27611213  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    | ||||||||||| ||  |  | |||| ||||||  |||||||||||||||||||    
T  27611212 ataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcact 27611158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 28786155 - 28786309
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  ||| | ||||||||||  ||||| |||   ||||||||  ||||||||||||||||||||||||| |||||   |||||||||||||     
T  28786155 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatca 28786254  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    | ||||||||||| ||  |  | |||||||||||  |||||||||||||||||||    
T  28786255 aaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcact 28786309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 28792276 - 28792430
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  ||| | ||||||||||  ||||| |||   ||||||||  ||||||||||||||||||||||||| |||||   |||||||||||||     
T  28792276 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatca 28792375  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    | ||||||||||| ||  |  | |||||||||||  |||||||||||||||||||    
T  28792376 aaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcact 28792430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 27718688 - 27718535
Alignment:
Q  5 atggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcca 104  Q
    |||||||||  ||| | ||||||||||  ||||| |||   ||||||||  || |||||||||||||||||||||| |||||   |||||||||||||||    
T  27718688 atggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatcca 27718589  T
Q  105 caccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
     ||||||||||| ||  |  | |||||||||||  |||||||||||||||||||    
T  27718588 taccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcact 27718535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 27531465 - 27531353
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||||||||||||||| |||||   ||||||||||||| | ||||||||||| ||  |  | |||||||||||  ||||||    
T  27531465 gacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgacaatgatcttcaaagaggagatgaaa 27531366  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  27531365 tcacaccatcact 27531353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 25071578 - 25071777
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||||| |||||||||||| ||||| || |||||||| | |||||| |||||||||||||| ||||| ||  || | ||| | |||||  | ||||    
T  25071578 gacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaaagagcttaagagaggtgacgaaa 25071677  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||||||| || ||     ||   |||||||| || |||||||||||||| ||  |||||||  |||||||||||||||||||||| ||| | ||||||||    
T  25071678 tcacaccttcgctccgcaagagcattgaagattcgagaattgccattatcgtcttctctaaagactatgcttcttcttcattttgtttagacgaacttgt 25071777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 28242723 - 28242910
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| || |||||||| |||||||||||||||| ||| ||| | |||||||| | |||||||||||| ||   | |||||| | ||||  |  |||    
T  28242723 gacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaa 28242822  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgctt 233  Q
    | ||||||||||||||  |||| |||||||||||||| |||  ||||  |||  | ||||  || |||||||||||||||||||||||    
T  28242823 taacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgctt 28242910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 27338359 - 27338197
Alignment:
Q  20 atgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacga 119  Q
    ||||||||||||  ||||| | | | |||||||  |||||||||||||| ||||||||||| |||||   ||||||||||||| | ||||||||||| ||    
T  27338359 atgtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatga 27338260  T
Q  120 tgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctag 182  Q
      |  | ||| |||||||  |||||| ||||||||||||| |  |||| ||||||||||||||    
T  27338259 caacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctag 27338197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 27399099 - 27398937
Alignment:
Q  20 atgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacga 119  Q
    ||||||||||||  ||||| | | | |||||||  |||||||||||||| ||||||||||| |||||   ||||||||||||| | ||||||||||| ||    
T  27399099 atgtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatga 27399000  T
Q  120 tgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctag 182  Q
      |  | ||| |||||||  |||||| ||||||||||||| |  |||| ||||||||||||||    
T  27398999 caacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctag 27398937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 27604973 - 27604860
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||||||||||||||||| ||||||||||| |||||   |||||||||||| || ||||||||||| ||  |  | |||| ||||||  ||||||    
T  27604973 gacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaa 27604874  T
Q  146 tcacaccatcactt 159  Q
    |||||||| |||||    
T  27604873 tcacaccagcactt 27604860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 27229151 - 27229263
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||| ||||||||||| |||||   ||||||||||||||| ||||||||||| ||  |  | |||||||||||  | ||||    
T  27229151 gacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaa 27229250  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  27229251 tcacaccatcact 27229263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 28781058 - 28781170
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||| ||||||||||| |||||   ||||||||||||| | ||||||||||| ||  |  | |||||||||||  ||||||    
T  28781058 gacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaa 28781157  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  28781158 tcacaccatcact 28781170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 26861535 - 26861734
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| || ||||||||||| ||||||||||| |||||   |||||||||||| ||||||||||| || |||    |||||||||||||| ||||||    
T  26861535 gacactcggtatggttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaa 26861634  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||| |  ||||||     | || ||||||||||||||||||  ||||  |||| | |||   |||||||| ||||| |||||||| ||  ||||||||||    
T  26861635 tcaaaagatcactcgacaatgccattgaagagtctagaattttcattcctgtgttttctgccaactatgcctcttcgtcattttgtttggatgaacttgt 26861734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 28226826 - 28227056
Alignment:
Q  3 ttatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatc 102  Q
    ||||||||||| ||| || |||||||| |  ||||||||  | |||||||| || |||||||| |||||||||||||  | ||| ||| | ||||||||     
T  28226826 ttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaatt 28226925  T
Q  103 cacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctct 202  Q
    ||||| ||| |||| |||  | | |||||| ||||  ||||||| ||| ||||||||||  |||  |||||||| ||||| |||  ||||  |||  | |    
T  28226926 cacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgt 28227025  T
Q  203 ctaagaactatgcttcttcttcattttgctt 233  Q
    |||  || |||||||||||||||||||||||    
T  28227026 ctatcaattatgcttcttcttcattttgctt 28227056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 29679721 - 29679599
Alignment:
Q  135 agggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgctta 234  Q
    |||| ||||||||||||| |||||| |  ||||||||||||| ||   ||| |||||  |||| ||||||||||| |||||||| || || |||||||||    
T  29679721 aggggatgaaatcacaccgtcacttattaaggcaattgaagactcacaaatcgccatagttgtcctctctaagaattatgcttcatcatccttttgctta 29679622  T
Q  235 catgaacttgtaaagatccttga 257  Q
    || ||||||  ||||||||||||    
T  29679621 caagaactttcaaagatccttga 29679599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 28180991 - 28181220
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||| || | |||||| | |||||||||    |||||||| || |||||||| ||||||||| | | |||||| ||||||||||||||||    
T  28180991 tatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagagctctttgtgacaagggaatcc 28181090  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
      |||||||| || ||   | | |||||| ||||  | ||||| ||| ||||||||||  |||| |||||||||||||| |||  ||||   ||  | ||    
T  28181091 gaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtc 28181190  T
Q  204 taagaactatgcttcttcttcattttgctt 233  Q
    ||  || |||||||||||||||||||||||    
T  28181191 tatcaattatgcttcttcttcattttgctt 28181220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 28185243 - 28185472
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||| || |||||||| | |||||||||    |||||||| ||  ||||||| ||||||||| | | |||||| ||||||||||||||||    
T  28185243 tatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagagctctttgtgacaagggaatcc 28185342  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
      |||||||| || ||   | | |||||| ||||  | ||||| ||| ||||||||||  |||| |||||||||||||| |||  ||||   ||  | ||    
T  28185343 gaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtc 28185442  T
Q  204 taagaactatgcttcttcttcattttgctt 233  Q
    ||  || |||||||||||||||||||||||    
T  28185443 tatcaattatgcttcttcttcattttgctt 28185472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 26884082 - 26884222
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| || ||||| || |||||||||||||| |||||   | ||||||||||||||||||||||||| ||| |  | |||| ||||||    ||||    
T  26884082 gacactcggtatggtttcactggaaatctctacaaggctcttactaacaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaa 26884181  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaatt 186  Q
    |||||||||||||  |  |||| |||||||| |||||||||    
T  26884182 tcacaccatcactcatcaaggccattgaagaatctagaatt 26884222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 26959084 - 26959268
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||||| | |||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||||| ||  || | ||| ||| |||| ||||||    
T  26959084 gacactcgattcagtttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaagagcttaaaaaaggggatgaaa 26959183  T
Q  146 tcacaccatcactt-ttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcatttt 229  Q
    ||||||| || ||| | | ||   |||||||| || || ||||||||||| ||  |||||||| | |||||||||||||| ||||    
T  26959184 tcacaccttcgcttctcaaagagcattgaagactcgaggattgccattatcgttttctctaaggaatatgcttcttcttcgtttt 26959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 27665262 - 27665186
Alignment:
Q  169 attgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    |||||||| || || |||||||||||| |  ||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  27665262 attgaagaatcgaggattgccattattatattctctaagaactatgctacttcttcattttgtttagatgaacttgt 27665186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 26635609 - 26635808
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||| || |||||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||||| ||  |  | ||| ||| |||| ||||||    
T  26635609 gacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaa 26635708  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||||||| || ||  |  ||   ||||||||||| || ||||||||||| ||  |||||||| | |||||||||||||  ||||| ||  ||||||||||    
T  26635709 tcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctttgttttgtttggatgaacttgt 26635808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 26646359 - 26646510
Alignment:
Q  7 ggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccaca 106  Q
    ||||||| |||| | || ||||||||||| || |||   ||||||||  |||||||||| ||| |||||||||| |||||   |||||||||||| ||||    
T  26646359 ggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcaca 26646458  T
Q  107 ccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    |||||||||| |||    | ||| | |||||  |||||||||||||||||||    
T  26646459 ccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcact 26646510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 26741575 - 26741774
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||| || |||||| ||||| || ||||| |||||||| | |||||| |||||| ||||||||||||| ||  |  | ||| ||| |||| ||||||    
T  26741575 gacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaa 26741674  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||||||| || ||  |  ||   ||||||||||| || ||||||||||| ||  |||||||| | |||||||||||||  ||||| ||  ||||||||||    
T  26741675 tcacaccttcgctcctcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctttgttttgtttggatgaacttgt 26741774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 26752327 - 26752478
Alignment:
Q  7 ggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccaca 106  Q
    ||||||| |||| | || ||||||||||| || |||   ||||||||  |||||||||| ||| |||||||||| |||||   |||||||||||| ||||    
T  26752327 ggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcaca 26752426  T
Q  107 ccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    |||||||||| |||    | ||| | |||||  |||||||||||||||||||    
T  26752427 ccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcact 26752478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 27214336 - 27214406
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattga 116  Q
    ||||||||| ||||||| ||||| |||||||| |||||||| |||||||| |||||||  |||||||||||    
T  27214336 gacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattga 27214406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 27234892 - 27234822
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattga 116  Q
    ||||||||| ||||||| ||||| |||||||| |||||||| |||||||| |||||||  |||||||||||    
T  27234892 gacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattga 27234822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 28098680 - 28098566
Alignment:
Q  3 ttatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatc 102  Q
    ||||||||||| ||| || ||||| || || ||||| |||   |||||||| || |||||||| |||||||||||||||||||| ||||||   ||| ||    
T  28098680 ttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaaagctctttgtgacggaggagtc 28098581  T
Q  103 cacaccttcattgac 117  Q
    | |||||||||||||    
T  28098580 cgcaccttcattgac 28098566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 29793723 - 29793589
Alignment:
Q  109 ttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaaga 208  Q
    ||||| || |||||||| ||| ||| |||  |||||||||||||||||||| |  | ||||||||||| || |  || ||||| ||||| |||||| | |    
T  29793723 ttcatcgatgatgaaaagcttaaaaaaggagatgaaatcacaccatcacttctcaaagcaattgaagactccatgatggccatcattgtcctctctgaaa 29793624  T
Q  209 actatgcttcttcttcattttgcttacatgaactt 243  Q
    | ||||||||||| || ||||||||||| ||||||    
T  29793623 attatgcttcttcatccttttgcttacaagaactt 29793589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 28325358 - 28325599
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||| || |||||||| |  ||||||||    |||||||| || |||||||| |||||||||||||||| ||| |||   ||| |||| |    
T  28325358 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattc 28325457  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
      ||||||||||| ||  || | |||||| ||||  | ||||| ||||| ||||||||  |||| |||||||||||||| |||  ||||  | |  | ||    
T  28325458 gtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtc 28325557  T
Q  204 taagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||  || |||||||||||||| ||||||||  ||||||||||    
T  28325558 tatcaattatgcttcttcttccttttgcttggatgaacttgt 28325599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 26617373 - 26617437
Alignment:
Q  181 agaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    |||||||||||| ||||  |||||||  |||||||||||||||||||||| ||| ||||||||||    
T  26617373 agaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgt 26617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 26723301 - 26723365
Alignment:
Q  181 agaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    |||||||||||| ||||  |||||||  |||||||||||||||||||||| ||| ||||||||||    
T  26723301 agaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgt 26723365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 28481268 - 28481165
Alignment:
Q  140 atgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatga 239  Q
    |||||||||||||||||||| |  | ||||||||||| || |  || ||||| ||||| |||||| | || ||||||||||| || ||||||||||| ||    
T  28481268 atgaaatcacaccatcacttctcaaagcaattgaagactccatgatggccatcattgtcctctctgaaaattatgcttcttcatccttttgcttacaaga 28481169  T
Q  240 actt 243  Q
    ||||    
T  28481168 actt 28481165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 25579652 - 25579774
Alignment:
Q  60 ttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcactt 159  Q
    ||||||||| |||||||| || |||||   |||||||||||| |  |||||| |||| ||| |  | |||||||||||  ||||||||||||||||||||    
T  25579652 ttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgataatgatcttcaaagaggagatgaaatcacaccatcactt 25579751  T
Q  160 ttagaggcaattgaagagtctag 182  Q
     |  |||| |||||||| |||||    
T  25579752 gtcaaggccattgaagaatctag 25579774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 29697499 - 29697398
Alignment:
Q  142 gaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaac 241  Q
    |||||||||||||||||| |  | ||||||||||| || |  || ||||| ||||| |||||| | || ||||||||||| || ||||||||||| ||||    
T  29697499 gaaatcacaccatcacttctcaaagcaattgaagactccatgatggccatcattgtcctctctgaaaattatgcttcttcatccttttgcttacaagaac 29697400  T
Q  242 tt 243  Q
    ||    
T  29697399 tt 29697398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 26342244 - 26342132
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  || |||||||||||||| ||||| ||| | | |||||| || |||||||| || ||| |||| | |||||||||||||   ||| |||    
T  26342244 tatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatctatagagctctatgtgacggtggagtcc 26342145  T
Q  104 acaccttcattga 116  Q
     ||||||||||||    
T  26342144 gcaccttcattga 26342132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 26655884 - 26656020
Alignment:
Q  22 gtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatg 121  Q
    ||||||||||  ||||| ||| | ||||| ||  ||||||||||||| ||||||||||| |||||   ||| ||||||||||| || |||||||| ||      
T  26655884 gtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgaca 26655983  T
Q  122 aaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    |  | ||||  |||||  |||||||||||||||||||    
T  26655984 atgatcttctcagaggagatgaaatcacaccatcact 26656020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 26761855 - 26761991
Alignment:
Q  22 gtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatg 121  Q
    ||||||||||  ||||| ||| | ||||| ||  ||||||||||||| ||||||||||| |||||   ||| ||||||||||| || |||||||| ||      
T  26761855 gtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgaca 26761954  T
Q  122 aaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    |  | ||||  |||||  |||||||||||||||||||    
T  26761955 atgatcttctcagaggagatgaaatcacaccatcact 26761991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 29761241 - 29761126
Alignment:
Q  142 gaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaac 241  Q
    |||||||||||||||||| |  | ||||||||| |||| |  || |||||  |||| |||||| | || ||||||||||| || ||||||||||| ||||    
T  29761241 gaaatcacaccatcacttcttaaagcaattgaacagtccatgatggccatcgttgtcctctctgaaaattatgcttcttcatccttttgcttacaagaac 29761142  T
Q  242 ttgtaaagatccttga 257  Q
    ||   |||||||||||    
T  29761141 tttctaagatccttga 29761126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 9169471 - 9169437
Alignment:
Q  295 ttctatgatgttgatccttctgatgtgcgaaagca 329  Q
    ||||||||||||||||||||||| |||||||||||    
T  9169471 ttctatgatgttgatccttctgaggtgcgaaagca 9169437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 25481675 - 25481797
Alignment:
Q  60 ttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcactt 159  Q
    ||||||||| |||||||| || |||||   |||||||||||| |  || |||||||| ||  |  | |||||||||||  ||||||||||||||||||||    
T  25481675 ttttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaaaatgatcttcaaagaggagatgaaatcacaccatcactt 25481774  T
Q  160 ttagaggcaattgaagagtctag 182  Q
     |  |||| |||||||| |||||    
T  25481775 gtcaaggccattgaagaatctag 25481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 27665385 - 27665315
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattga 116  Q
    ||||||||||  ||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||    
T  27665385 gacactcgatttggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattga 27665315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 29733253 - 29733119
Alignment:
Q  109 ttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaaga 208  Q
    ||||| ||||||||  | ||||||| |||  | |||||||||||||||||| |  | ||||||||||| ||   ||| |||||  | || || |||||||    
T  29733253 ttcatggacgatgaggagcttcaaaaaggcgaagaaatcacaccatcacttctcaaagcaattgaagactcccaaatcgccatcgtcgtcctttctaaga 29733154  T
Q  209 actatgcttcttcttcattttgcttacatgaactt 243  Q
    | ||||||||||| || ||||||||||| ||||||    
T  29733153 attatgcttcttcctccttttgcttacaagaactt 29733119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 329
Target Start/End: Complemental strand, 33288188 - 33288154
Alignment:
Q  295 ttctatgatgttgatccttctgatgtgcgaaagca 329  Q
    ||||||||||||||||||||||| |||||||||||    
T  33288188 ttctatgatgttgatccttctgaggtgcgaaagca 33288154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 26142799 - 26142920
Alignment:
Q  61 tttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttt 160  Q
    |||||||| |||||||| || |||||   |||||||||||| |  || |||||||| ||| |  | ||| |||||||  ||||||||||||||||||||     
T  26142799 tttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgataatgatcttgaaagaggagatgaaatcacaccatcacttg 26142898  T
Q  161 tagaggcaattgaagagtctag 182  Q
    |  |||| |||||||| |||||    
T  26142899 tcaaggccattgaagaatctag 26142920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 29467797 - 29467858
Alignment:
Q  97 ggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcact 158  Q
    ||||| ||||||||||| || |||||| ||||||||| |||  | |||||||||||||||||    
T  29467797 ggaattcacaccttcatggatgatgaagaacttcaaaaaggcgaagaaatcacaccatcact 29467858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 28139430 - 28139530
Alignment:
Q  16 tacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattg 115  Q
    |||||||| || |||| ||| ||||||   |||||||| | |||||| || ||||||||||||||||||||  |||||   ||||||||||| || ||||    
T  28139430 tacgatgtctttctcagcttcagaggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattg 28139529  T
Q  116 a 116  Q
    |    
T  28139530 a 28139530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 34602 - 34831
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||| || |||||||| |  ||||||||    |||||||| || |||||||||| ||||||||| | |||||| ||| ||||||||||||    
T  34602 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 34701  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
    ||||||||||||| ||     | |||||| ||||  ||||||| ||||||||||||||  |||| |||||||||||||| |||  ||||  |||  | ||    
T  34702 acaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtc 34801  T
Q  204 taagaactatgcttcttcttcattttgctt 233  Q
    ||  || |||||||||||||||||||||||    
T  34802 tatcaattatgcttcttcttcattttgctt 34831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 233
Target Start/End: Original strand, 42885 - 43072
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| || |||||||| |||||||||||||||| ||| ||| | |||||||| | |||||||||||| ||   | |||||| | ||||  |  |||    
T  42885 gacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaa 42984  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgctt 233  Q
    | ||||||||||||||  |||| |||||||||||||| |||  ||||  |||  | ||||  || |||||||||||||||||||||||    
T  42985 taacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgctt 43072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 27324 - 27554
Alignment:
Q  3 ttatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatc 102  Q
    ||||||||||| ||| || |||||||| |  ||||||||  | |||||||| || |||||||| |||||||||||||  | ||| ||| | ||||||||     
T  27324 ttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaatt 27423  T
Q  103 cacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctct 202  Q
    ||||| ||| |||| |||  | | |||||| ||||  ||||||| ||| ||||||||||  |||  |||||||| ||||| |||  ||||  |||  | |    
T  27424 cacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgt 27523  T
Q  203 ctaagaactatgcttcttcttcattttgctt 233  Q
    |||  || |||||||||||||||||||||||    
T  27524 ctatcaattatgcttcttcttcattttgctt 27554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 116673 - 116914
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| ||| || |||||||| |  ||||||||    |||||||| || |||||||| |||||||||||||||| ||| |||   ||| |||| |    
T  116673 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaggaagagaattc 116772  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
      ||||||||||| ||  || | |||||| ||||  | ||||| ||||| ||||||||  |||| |||||||||||||| |||  ||||  | |  | ||    
T  116773 gtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtc 116872  T
Q  204 taagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    ||  || |||||||||||||| ||||||||  ||||||||||    
T  116873 tatcaattatgcttcttcttccttttgcttggatgaacttgt 116914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 58592 - 58363
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    |||||||||| |||  | |||||||| | ||||||||| |  |||||||| || |||||||| ||||||||||||| |||||| ||||||||||||||||    
T  58592 tatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctctttgtgacaagggaatcc 58493  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctc 203  Q
      |||||||| || ||   | | |||||| ||||  | ||||| ||||||||||||||  |||| ||| |||||||||| |||  ||||   ||  | ||    
T  58492 gaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtc 58393  T
Q  204 taagaactatgcttcttcttcattttgctt 233  Q
    ||  ||||||||||||||||||||||||||    
T  58392 tatcaactatgcttcttcttcattttgctt 58363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 3690 - 3578
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||| ||  |  | |||||||||||  ||||||    
T  3690 gacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 3591  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  3590 tcacaccatcact 3578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 14623 - 14511
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||||||||||||||| |||||   ||||||||||||||| ||||||||||| ||  |  | |||||||||||  ||||||    
T  14623 gacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 14524  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  14523 tcacaccatcact 14511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 4981 - 4830
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  ||| | ||||||||||  ||||| ||| | ||||||||  ||||||||||||||||||||||||| |||||   |||||||||||||     
T  4981 tatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatca 4882  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatc 155  Q
    | ||||||||||| ||  |  | |||||||||||  ||||||||||||||||    
T  4881 aaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatc 4830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 13900 - 13788
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||| ||||||||||| |||||   ||||||||||||| | ||||||||||| ||  |  | |||||||||||  ||||||    
T  13900 gacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaa 13801  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  13800 tcacaccatcact 13788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 613196 - 613311
Alignment:
Q  142 gaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaac 241  Q
    ||||| |||||||||||| |  | ||||||||||| ||||  || ||||||||||| ||||||||||||||||||||||| || ||||||||||| |||     
T  613196 gaaattacaccatcacttctcaaagcaattgaagactctatgatggccattattgttctctctaagaactatgcttcttcctctttttgcttacaagaat 613295  T
Q  242 ttgtaaagatccttga 257  Q
    ||  ||||||||||||    
T  613296 tttcaaagatccttga 613311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 5091222 - 5091023
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    |||||||| ||||||||||| |||||||||||  |||||||| ||| ||||||||| |||||||||||||| ||   | | |||||  ||||  |  |||    
T  5091222 gacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttcattgatgacagagagcttcagcgaggagaccaaa 5091123  T
Q  146 tcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    | ||||| |||||| |  |||| ||| |||| ||||  |||| |||||| ||  |||||||  |||||||||||||||| ||||| ||| ||||||||||    
T  5091122 taacaccgtcacttctcaaggccattcaagaatctaagattgtcattatcgttttctctaaccactatgcttcttcttcgttttgtttagatgaacttgt 5091023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 18655732 - 18655662
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattga 116  Q
    ||||||||  |||||||||| ||  ||||||||||||||||   |||||||||||||||||||||||||||    
T  18655732 gacactcgtaacggttttactgggcatctctacaaagctcttactgacaagggaatccacaccttcattga 18655662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 18699655 - 18699585
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattga 116  Q
    ||||||||  |||||||||| ||  ||||||||||||||||   |||||||||||||||||||||||||||    
T  18699655 gacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattga 18699585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 18724340 - 18724228
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  |||||||||| ||  |||||||||| |||||   ||||||||||||||||||||||||||| ||     | || ||||||||| ||||||    
T  18724340 gacactcgtaacggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaa 18724241  T
Q  146 tcacaccatcact 158  Q
    ||| |||||||||    
T  18724240 tcaaaccatcact 18724228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 18731759 - 18731647
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  |||||||||| ||  ||||||||| ||||||   ||||||||||||||||||||||||||| ||     | || ||||||||| ||||||    
T  18731759 gacactcgtgacggttttactggccatctctacagagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaa 18731660  T
Q  146 tcacaccatcact 158  Q
    ||| |||||||||    
T  18731659 tcaaaccatcact 18731647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 18679822 - 18679710
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  |||||||||| ||  |||||||||| |||||   |||||| |||||||||||||||||||| ||     | || ||||||||| ||||||    
T  18679822 gacactcgtaacggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaa 18679723  T
Q  146 tcacaccatcact 158  Q
    ||| |||||||||    
T  18679722 tcaaaccatcact 18679710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 268633 - 268500
Alignment:
Q  25 ttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaa 124  Q
    ||||||||||| ||||||   ||||||||  | |||||||  ||  |||||||||| |||||   ||||||||||||||||||||||||||| |||        
T  268633 ttcctcaacttcagaggcggtgacactcgtgagggttttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtg 268534  T
Q  125 aacttcaaagagggcatgaaatcacaccatcact 158  Q
    |||||||||||||| ||||||||| |||||||||    
T  268533 aacttcaaagaggggatgaaatcaaaccatcact 268500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 28127977 - 28127794
Alignment:
Q  4 tatggattcatctacgatgtgttcctcaactttagaggcttagacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatcc 103  Q
    ||||||||||  ||| | |||||||||| ||| || |||   ||||||||  ||||||| || ||  |||||||||| || || | ||||||||||||||    
T  28127977 tatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctttatgacaagggaatcc 28127878  T
Q  104 acaccttcattgacgatgaaaaacttcaaagagg-gcatgaaatcacaccatcacttttagaggcaattgaagagtctagaatt 186  Q
    |||| |||||||| |||   || ||| | ||||| | |  |||||||||| ||||||||| |||| |||||||| |||||||||    
T  28127877 acacattcattgatgattgtaatcttgagagaggagaaaaaaatcacaccgtcacttttaaaggccattgaagaatctagaatt 28127794  T

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Target: scaffold1254 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 185 - 73
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||| ||||||||||| |||||   ||||||||||||| | ||||||||||| ||  |  | |||||||||||  ||||||    
T  185 gacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaa 86  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  85 tcacaccatcact 73  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 7444 - 7556
Alignment:
Q  46 gacactcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaa 145  Q
    ||||||||  ||||||||||||| ||||||||||| |||||   ||||||||||||| | ||||||||||| ||  |  | |||||||||||  ||||||    
T  7444 gacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaa 7543  T
Q  146 tcacaccatcact 158  Q
    |||||||||||||    
T  7544 tcacaccatcact 7556  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 17993949 - 17993753
Alignment:
Q  49 actcgatacggttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatca 148  Q
    |||||||| ||||| ||||| |||||||| |||||||| | |||||||||||| |  |||||||| || ||  || | ||||| |||||  |||||||||    
T  17993949 actcgatatggtttcaccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatca 17993850  T
Q  149 caccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
    |||| || ||  |  ||   |||||||| || |||||||| ||||| ||  |||| ||| |||||||||||||||||||||| ||| | ||||||||    
T  17993849 caccgtcgctcctcaagagcattgaagactcaagaattgcgattatcgtcttctcaaaggactatgcttcttcttcattttgtttagacgaacttgt 17993753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 17698772 - 17698887
Alignment:
Q  145 atcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttg 244  Q
    ||||||||||||||| |  | || ||| || | |||||||||  |||| ||||  ||||||| ||||||||||| ||| | ||||||||  |||||||||    
T  17698772 atcacaccatcacttcttcaagctattcaacaatctagaattttcattgttgttttctctaacaactatgcttcctctactttttgcttgaatgaacttg 17698871  T
Q  245 taaagatccttgactg 260  Q
    | | ||||||||||||    
T  17698872 tcatgatccttgactg 17698887  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 17438156 - 17438190
Alignment:
Q  295 ttctatgatgttgatccttctgatgtgcgaaagca 329  Q
    ||||||||||||||||||||||| |||||||||||    
T  17438156 ttctatgatgttgatccttctgaggtgcgaaagca 17438190  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 214508 - 214391
Alignment:
Q  140 atgaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatga 239  Q
    ||||||| ||||||||||||||  |||||||||| || || |  || |||||  |||| ||||||||||| || |||||||| || ||||||||||| ||    
T  214508 atgaaattacaccatcacttttcaaggcaattgatgaatccaagatcgccatagttgtcctctctaagaattacgcttcttcatccttttgcttacaaga 214409  T
Q  240 acttgtaaagatccttga 257  Q
    ||||  ||||||||||||    
T  214408 actttcaaagatccttga 214391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 241853 - 241738
Alignment:
Q  142 gaaatcacaccatcacttttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaac 241  Q
    |||||||||||||||||| |  | ||||||||||| || |  || |||||| |||| ||||||||||| |||||||| || || ||||||||||| ||||    
T  241853 gaaatcacaccatcacttctcaaagcaattgaagactccatgatggccattgttgtcctctctaagaattatgcttcctcctccttttgcttacaagaac 241754  T
Q  242 ttgtaaagatccttga 257  Q
    ||  |||||| |||||    
T  241753 tttcaaagatacttga 241738  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 245
Target Start/End: Original strand, 16688944 - 16689129
Alignment:
Q  60 ttttaccggaaatctctacaaagctctatgtgacaagggaatccacaccttcattgacgatgaaaaacttcaaagagggcatgaaatcacaccatcactt 159  Q
    |||||| || ||||| ||||||||||||||||||||||||||||    ||||||||| ||  |  ||||||| |||||  |  |||||||||||||||||    
T  16688944 ttttactggtaatctgtacaaagctctatgtgacaagggaatccgtgtcttcattgatgacaaggaacttcagagaggtgacaaaatcacaccatcactt 16689043  T
Q  160 ttagaggcaattgaagagtctagaattgccattattgtgctctctaagaactatgcttcttcttcattttgcttacatgaacttgt 245  Q
     |  ||||||||||||| || || ||||| ||    ||| | |||||||||||||| | ||| || ||||| ||  ||||||||||    
T  16689044 atcaaggcaattgaagactcaaggattgcaatccccgtgttttctaagaactatgcattttcctcgttttgtttggatgaacttgt 16689129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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