View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_40 (Length: 511)
Name: NF1299_2D_low_40
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 8297178 - 8296705
Alignment:
| Q |
20 |
attagatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctattgaggatagaatggaattaaaagggaacttagaaagtatcagagttg |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8297178 |
attagatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctatggaggatagaatggaattaaaagggaacttagaaagtatcagagttg |
8297079 |
T |
|
| Q |
120 |
aaatgcaaactatggagggtaaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttcagtttgaagcatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8297078 |
aaatgcaaactatggagggtaaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttcagtttgaagcatg |
8296979 |
T |
|
| Q |
220 |
aaaaactctgtatttaagattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggag |
319 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8296978 |
aaaaactctgtatttaacattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattcagggag |
8296879 |
T |
|
| Q |
320 |
ctgaaaaagtttcggttcatcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactatgtctagt |
419 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8296878 |
ctgaaaaagtttcggttcatcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactatgtctggt |
8296779 |
T |
|
| Q |
420 |
ttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatgt |
493 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8296778 |
ttcctgtcactcatcttcaatgtttgaagtatgtaaaactatgtctgttatattctgaaaatttttcttgatgt |
8296705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 492
Target Start/End: Complemental strand, 8300755 - 8300283
Alignment:
| Q |
21 |
ttagatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctattgaggatagaatggaattaaaagggaacttagaaagtatcagagttga |
120 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
8300755 |
ttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatggaggatagagtggaattaaaagggaactcagaaagtatcagagttga |
8300656 |
T |
|
| Q |
121 |
aatgcaaactatggagggtaaaatgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttca--------gtttg |
212 |
Q |
| |
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|||||||||||||||| |||||||| | |||| ||| ||||| || ||| |||||| |||||||||||||||||||||||||||| ||||| |
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| T |
8300655 |
aatgcaaactatggagtacaaaatgaagtgtctcgaaatctttacgcagatctatctcgagtaaaatttcttgccttgttaatttcattttcaaagtttg |
8300556 |
T |
|
| Q |
213 |
aagcatgaaaaactctgtatttaagattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttatt |
312 |
Q |
| |
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||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||| |
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| T |
8300555 |
aagaatgaaaaactctgtctttaatattctgaaaattttgctcatg-------gtgttaacctctgcattcctaattccatgtcctgtatggtaattatt |
8300463 |
T |
|
| Q |
313 |
gagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300462 |
cagggagctgaaaaagtttcggttcatcttataaacatgaagtagggtggtttttatttttgtttatatagaaaatgaattaggttggttttataactat |
8300363 |
T |
|
| Q |
413 |
gtctagtttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatg |
492 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
8300362 |
gtctggtttcctgtcactcattttcaatgtttgaagtatgtaaaactatgtctgttatattctaaaaatttctcttgatg |
8300283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 18279473 - 18279782
Alignment:
| Q |
24 |
gatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctattgaggatagaatggaattaaaagggaacttagaaagtatcagagttgaaat |
123 |
Q |
| |
|
||||| |||||| ||| | ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
18279473 |
gatatatcaaaagctttacgctgaattttctcgagtctattaagtctttggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaaa |
18279572 |
T |
|
| Q |
124 |
gcaaactatggagggtaaaatgaattttctcaaaagct---ttatgcggatttatctctagtaaaatttcttgccttgttaatttc--------agtttg |
212 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||||| ||||||| | ||||||| |||||||||||||| |||||||||||| |||||| |
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| T |
18279573 |
gcaaactatggaggataatttgaattgtctcaaaagctttattatgcgtacttatctcgagtaaaatttcttggcttgttaatttcattttcaaagtttg |
18279672 |
T |
|
| Q |
213 |
aagcatgaaaaactctgtatttaagattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttatt |
312 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18279673 |
aagcatgaaaaa--ctgtctttaatattctgaaagtattgctcatga-------tgttaacctctgcatagctaatttcatgtcctgtatggtacttatt |
18279763 |
T |
|
| Q |
313 |
gagggagctgaaaaagttt |
331 |
Q |
| |
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||||| |||||||||||| |
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| T |
18279764 |
cagggatctgaaaaagttt |
18279782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 18279889 - 18279964
Alignment:
| Q |
418 |
gtttcctgtcactcattttcaaagtttgaagtatgtaaaactatgtctgttatattctgaaattttttcttgatgt |
493 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
18279889 |
gtttcctgtgcctcaacttcaaagtttgaagtatgcaaaactatgtctgttaaattctgaaaatttctcttgatgt |
18279964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 44 - 328
Target Start/End: Complemental strand, 1145356 - 1145074
Alignment:
| Q |
44 |
ctgaattttctcgagtctatcaagtctattgaggatagaatggaattaaaagggaacttagaaagtatcagagttgaaatgcaaactatggagggtaaaa |
143 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
1145356 |
ctgaattttctcgagtctatcaagtatctggaggatagaatggaattaaaagggaacttagaaagtatcagaattgaaatgcaaactatggaggataaaa |
1145257 |
T |
|
| Q |
144 |
tgaattttctcaaaagctttatgcggatttatctctagtaaaatttcttgccttgttaatttc--------agtttgaagcatgaaaaactctgtattta |
235 |
Q |
| |
|
||| || ||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
1145256 |
tgatttggctcgaaagctttatgcggatttatctcgagtaaaatatcttgcctggttaatttcattttcaaagtttgaagcatgaaaaactctg--ttta |
1145159 |
T |
|
| Q |
236 |
agattctgaaaattctgctcatgatgttaagtgttaacctctgcattgctaatttcatgtcctgtatggtacttattgagggagctgaaaaag |
328 |
Q |
| |
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| |||||||||||| ||||| ||||| |||||||||| |||||||||||||||| ||||||||| ||||| |||||| || ||||| |
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| T |
1145158 |
atattctgaaaattttgctcttgatg--------taacctctgctttgctaatttcatgtcttgtatggtaattattcagggaggtgcaaaag |
1145074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 21120537 - 21120586
Alignment:
| Q |
88 |
attaaaagggaacttagaaagtatcagagttgaaatgcaaactatggagg |
137 |
Q |
| |
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|||||| | |||||| |||||| ||||||||||||||||||||||||||| |
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| T |
21120537 |
attaaacgagaacttggaaagtctcagagttgaaatgcaaactatggagg |
21120586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Original strand, 21120969 - 21121004
Alignment:
| Q |
336 |
tcatcttataaacatgaagtagggtggtttttattt |
371 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
21120969 |
tcatcttataaacatgaagtaggctggtttttattt |
21121004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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