View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_45 (Length: 482)
Name: NF1299_2D_low_45
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 5159770 - 5159312
Alignment:
| Q |
16 |
gatggaacaggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatt |
115 |
Q |
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| T |
5159770 |
gatggaacaggagcatagatgttgccacgtaagagcatattatcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatt |
5159671 |
T |
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| Q |
116 |
tgtagnnnnnnncccctctgtttgtgacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggata |
215 |
Q |
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| T |
5159670 |
tgtagtttttttcccctctgtttgtgacctttgtgtagtctgagaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggata |
5159571 |
T |
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| Q |
216 |
atgtgattagtttggttggtaggtattggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaa-ataaagtttagataagggaaaac |
314 |
Q |
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| T |
5159570 |
atgtgattagtttggttggtagttattggctatgtgctttcttcttgttgggtccacaaatagccatgctttgcaagataaagtttagataagggaaaac |
5159471 |
T |
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| Q |
315 |
ataccatggagaattatcagttaaatttgacagattaaacacaggagtacttcttatgtgtctctggttcttttttatctgattttcacgctgagttctg |
414 |
Q |
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| T |
5159470 |
ataccatggagaattatcagttaaatttgacagattaaacacaggagtacttcttatgtgtctctggttcttttttatctgattttcacgctgagttctg |
5159371 |
T |
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| Q |
415 |
tcattcatcattgtttcaagttactcattcagggtcccaagtaagtaggatgtccatct |
473 |
Q |
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| T |
5159370 |
tcattcatcattgtttcaagttactcattcagggtcccaagtaagtagtatgtccatct |
5159312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 5162638 - 5162577
Alignment:
| Q |
414 |
gtcattcatcattgtttcaagttactcattcagggtccc--aagtaagtaggatgtccatct |
473 |
Q |
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| T |
5162638 |
gtcattcatcattgtttcaagttactcattcatggtctcaaaagtatgtagtatgtccatct |
5162577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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