View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_47 (Length: 457)
Name: NF1299_2D_low_47
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 9945493 - 9945052
Alignment:
| Q |
1 |
tatataactgttcaatttgtctagatgatattttctaaatatcattcttttataatcttttgcaaacggatattgaaaatattaattgtcaaaattgtgt |
100 |
Q |
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| T |
9945493 |
tatataactgttcaatttgtctagatgatattttctaaatatcattcttttataatcttttgcaaatggatattgaaaatattaattgtcaaaattgtgt |
9945394 |
T |
|
| Q |
101 |
aggagtatatgtgaaaattaactcatttggattgatttatcggtgtaatttgtttgagatattgaaatgtgttttttgatgggcaagttcatacagaaca |
200 |
Q |
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| T |
9945393 |
aggagtatatgtgaaaattagctcatttgggttgatttatcggtgtaatttgtttgagatattgaaatgtgttttttgatgggcaagttcatacagatca |
9945294 |
T |
|
| Q |
201 |
ttgcgttgactttaaataaggtccgcataatggtcaatgaaattgaacccttcgaattagtcggtatttaaaccagatatcagattttttattnnnnnnn |
300 |
Q |
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| T |
9945293 |
atgcgttgactttaaataaggtccgcagagtggtcattgaaattgaacccttcaaattagtcggtatttaaaccagataccagattttttattaaaaaaa |
9945194 |
T |
|
| Q |
301 |
tatgctaaagttgaattgtgatgggacaagtagagtattaacaagtgatacatttnnnnnnnnngtaataaatgcatttaaaaatttatagataattgta |
400 |
Q |
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| T |
9945193 |
tatgctaaagttgaattttgatgggacaaggagagtattaacaagtgatacatttttaaaaaaagtaatagatgcatttaaaaatttatagataattgta |
9945094 |
T |
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| Q |
401 |
taattaaagacacctaannnnnnnnatgaagtgttttatgat |
442 |
Q |
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| T |
9945093 |
taattaaagacacctaattttttttatgaagtgttttatgat |
9945052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 23359774 - 23359817
Alignment:
| Q |
367 |
aataaatgcatttaaaaatttatagataattgtataattaaaga |
410 |
Q |
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| T |
23359774 |
aataaatacatttaaaaatttatagataattttatagttaaaga |
23359817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 13141523 - 13141555
Alignment:
| Q |
365 |
gtaataaatgcatttaaaaatttatagataatt |
397 |
Q |
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| T |
13141523 |
gtaataaatgcatttaaaaatttatcgataatt |
13141555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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