View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_49 (Length: 454)
Name: NF1299_2D_low_49
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 214 - 438
Target Start/End: Original strand, 8091928 - 8092152
Alignment:
| Q |
214 |
aacatagaagctaatccacattgttttgtatggtagaacactcaaatttcaaatagctgttttagattgtaaggccatgtgacactgccatttccattcc |
313 |
Q |
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| T |
8091928 |
aacacagaagctaatccacattgttttgtatggtagaacactcaaatttcaaatagttgttttagattgtaaggccatgtgacactgccatttccattcc |
8092027 |
T |
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| Q |
314 |
atatcaatttggcaaaatactgattagctttctctgtaggatgatgagtgtcaaagaatacatgttcattcacattgtcacataactcatattctttgtt |
413 |
Q |
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| T |
8092028 |
atatcaatttggcaaaatactgattagctttctctgtaggatgatgagtgtcaaagaatacatgttcattcacattgtcacataactcatattctttgtt |
8092127 |
T |
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| Q |
414 |
ccctccacagccacttccacaacat |
438 |
Q |
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| T |
8092128 |
ccctccacagccacttccacaacat |
8092152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 8091757 - 8091906
Alignment:
| Q |
19 |
tgttgatcacaaactataaagacgtactatatat-cagatattgtttcccttagtaatgaaattcaaatctattattatataagggcaaaagaaaaacag |
117 |
Q |
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|||||||||||||||||| | |||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || |
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| T |
8091757 |
tgttgatcacaaactatataaacgtaccatatatgcagatattgtttcccttagtaatggaattcaaatctatt---atataagggcaaaagaaaaagag |
8091853 |
T |
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| Q |
118 |
aaagtcctaaatccaagcacaaatttattaaaacctcaatctctaaacaataa |
170 |
Q |
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| T |
8091854 |
aaagtcctaaatccaagcacaaatttattaaaacctcaatctctaaacaataa |
8091906 |
T |
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