View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1299_2D_low_53 (Length: 450)
Name: NF1299_2D_low_53
Description: NF1299_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1299_2D_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 195 - 433
Target Start/End: Complemental strand, 19077356 - 19077119
Alignment:
| Q |
195 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
294 |
Q |
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| T |
19077356 |
caccttaggttaatcaattgcagcttctacgcctaaactcattggatataactcatcattgtactccatcaatctatcaacataactaagccctacaatt |
19077257 |
T |
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| Q |
295 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagtcctgcaaagttcttatcaaaccacccaaagctcc |
394 |
Q |
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| T |
19077256 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagttctgcaaaattcttatcaaaccacccaaagctcc |
19077157 |
T |
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| Q |
395 |
aatggtttgattagcaaatagttaattaatggaaaaaag |
433 |
Q |
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||| |||| |||||||||||||||||||||||||||||| |
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| T |
19077156 |
aatagttt-attagcaaatagttaattaatggaaaaaag |
19077119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 19077536 - 19077391
Alignment:
| Q |
15 |
atgaacaaccatatatgacgattccttaatcaccttttatatcacttcactttaatataagttaacgtcttttaggaaattctgatcaatcaatctccca |
114 |
Q |
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| T |
19077536 |
atgaacaaccagacatggcgattccttaatcaccttttatatcacttcactttaatataagttaacgtcttctacgaaattctgatcaatcaatctccca |
19077437 |
T |
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| Q |
115 |
tgataatctctccaatgattccataataatcttggcataggatatc |
160 |
Q |
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| T |
19077436 |
tgataatctctccaatgattccataataatcttggcataggatatc |
19077391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 19079261 - 19079116
Alignment:
| Q |
15 |
atgaacaaccatatatgacgattccttaatcaccttttatatcacttcactttaatataagttaacgtcttttaggaaattctgatcaatcaatctccca |
114 |
Q |
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|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| |
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| T |
19079261 |
atgaacaatcaaatatgacgattccttaatcaccttttacatcacttcactttaatataagttaacgtcttctacgaaattttgatcaatcaatctccca |
19079162 |
T |
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| Q |
115 |
tgataatctctccaatgattccataataatcttggcataggatatc |
160 |
Q |
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| T |
19079161 |
tgataatctctccaatgattccataataatcttggcataggatatc |
19079116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 244 - 356
Target Start/End: Complemental strand, 19079008 - 19078896
Alignment:
| Q |
244 |
aacttatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttcctctatttctggactatgcctttatatgtt |
343 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19079008 |
aactcatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttccactatttctggactatgcctttatatgtt |
19078909 |
T |
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| Q |
344 |
taaataaaagctc |
356 |
Q |
| |
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|||||||| |||| |
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| T |
19078908 |
taaataaaggctc |
19078896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 19078091 - 19078247
Alignment:
| Q |
195 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
294 |
Q |
| |
|
|||||||||| | ||||||| ||||||| |||||| |||| |||| ||||| ||||| ||||||||||| |||||| |||| ||| | | | |||| |
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| T |
19078091 |
caccttaggtaagtcaattggagcttcttaacctaaaatcattggatgtaactcatcatcgtactccatcactctatctacatgacttatgcatttaatt |
19078190 |
T |
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| Q |
295 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaa |
351 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||||||| ||||| ||||| |
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| T |
19078191 |
tctattttatattttcttcctctatttttggaatatgcctttatcggtttagataaa |
19078247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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